HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:98.1 nTPM
HPA Brain:53.3 nTPM
GTEx:98.1 nTPM
FANTOM5:52.9 Scaled Tags Per Million
Pig:38.3 nTPM
Mouse:30.0 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA056557Antibody CAB033426
Glial cells MediumLow
Neuronal cells Not detectedHigh



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 53.3
Sample id Sample description nTPM
Hippocampus
nTPM: 38.5
1911 Female, age 85, right hemisphere 52.0
1898 Male, age 80, left hemisphere 42.4
2621 Female, age 67, right hemisphere 41.3
2529 Female, age 94, left hemisphere 33.9
1855 Male, age 76, left hemisphere 31.7
2148 Female, age 91, left hemisphere 29.8
Dentate gyrus
nTPM: 40.8
2530 Female, age 94, left hemisphere 76.9
2528 Male, age 74, both hemispheres 47.7
2010 Male, age 76, both hemispheres 39.7
2246 Female, age 85, both hemispheres 30.7
2531 Female, age 67, both hemispheres 29.7
1927 Female, age 91, both hemispheres 20.3
Entorhinal gyrus
nTPM: 38.7
2117 Female, age 91, right hemisphere 68.2
2764 Male, age 80, right hemisphere 48.3
1938 Female, age 85, left hemisphere 32.6
1787 Male, age 76, left hemisphere 28.3
2613 Female, age 94, left hemisphere 28.1
2686 Male, age 75, right hemisphere 26.8
Hippocampus, CA1
nTPM: 28.7
2527 Male, age 74, both hemispheres 38.8
1873 Female, age 85, both hemispheres 31.4
2082 Female, age 91, right hemisphere 30.1
2749 Male, age 80, left hemisphere 28.1
2045 Male, age 76, both hemispheres 15.2
Hippocampus, CA2
nTPM: 40.4
2249 Male, age 74, both hemispheres 57.6
1963 Male, age 80, left hemisphere 46.4
2437 Female, age 94, left hemisphere 45.2
1940 Female, age 85, left hemisphere 36.7
2113 Female, age 91, right hemisphere 31.5
1892 Male, age 76, both hemispheres 25.0
Hippocampus, CA3
nTPM: 31.3
1891 Female, age 85, both hemispheres 57.2
1867 Male, age 76, both hemispheres 37.1
2436 Male, age 74, both hemispheres 34.5
2620 Female, age 94, left hemisphere 25.0
2137 Male, age 80, left hemisphere 19.9
2861 Female, age 67, both hemispheres 14.3
Parahippocampal cortex
nTPM: 30.8
2532 Female, age 72, left hemisphere 48.7
2692 Male, age 74, both hemispheres 44.8
1990 Female, age 91, right hemisphere 37.8
2018 Male, age 76, both hemispheres 31.8
1850 Male, age 80, both hemispheres 30.2
1933 Female, age 85, both hemispheres 29.7
2245 Female, age 91, both hemispheres 29.2
2693 Female, age 94, both hemispheres 23.6
2250 Female, age 67, right hemisphere 18.7
2622 Female, age 67, right hemisphere 13.0
Perirhinal gyrus
nTPM: 21.9
1794 Male, age 80, right hemisphere 25.2
2521 Female, age 94, right hemisphere 24.6
2848 Male, age 76, right hemisphere 21.9
1841 Female, age 85, right hemisphere 19.6
1847 Female, age 91, left hemisphere 18.0
Subiculum
nTPM: 53.3
2042 Male, age 76, both hemispheres 79.4
1901 Male, age 80, both hemispheres 70.8
1977 Female, age 85, both hemispheres 52.5
2619 Male, age 74, both hemispheres 44.4
2438 Female, age 94, left hemisphere 38.2
2729 Female, age 91, right hemisphere 34.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 98.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 98.1
Samples: 255

Max nTPM: 423.7
Min nTPM: 13.4
Std nTPM: 67.0
Median nTPM: 76.9
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 423.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 377.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 346.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 327.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 322.0
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 315.2
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 270.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 254.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 246.8
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 230.1
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 224.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.9
FF:10153-102I9 76 years, female 60.2
FF:10169-103B7 60 years, female 45.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 38.3
Pig sample Sample description nTPM
Subiculum
nTPM: 15.8
Samples: 4

Max nTPM: 17.7
Min nTPM: 12.5
Sample A Female 15.6
Sample B Female 17.7
Sample C Male 12.5
Sample D Male 17.5
Dorsal hippocampus
nTPM: 38.3
Samples: 4

Max nTPM: 55.8
Min nTPM: 13.6
Sample A Female 54.8
Sample B Female 29.1
Sample C Male 55.8
Sample D Male 13.6
Entorhinal cortex
nTPM: 15.2
Samples: 4

Max nTPM: 18.8
Min nTPM: 13.1
Sample A Female 14.1
Sample B Female 18.8
Sample C Male 13.1
Sample D Male 14.9
Ventral hippocampus
nTPM: 26.2
Samples: 4

Max nTPM: 36.1
Min nTPM: 12.2
Sample A Female 28.7
Sample B Female 12.2
Sample C Male 27.8
Sample D Male 36.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 30.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.4
Samples: 4

Max nTPM: 21.6
Min nTPM: 16.4
Sample A Male 21.6
Sample B Male 18.0
Sample C Female 21.6
Sample D Female 16.4
Hippocampal formation
nTPM: 30.0
Samples: 4

Max nTPM: 42.0
Min nTPM: 19.4
Sample A Male 19.4
Sample B Male 26.7
Sample C Female 42.0
Sample D Female 31.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
69671989 Antisense, RP_050428_02_G06, Mouse strain C57BL/6J (56 days, male) 0.9
74882527 Antisense, RP_060315_04_E12, Mouse strain C57BL/6J (56 days, male) 0.6

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