On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
357.2
nTPM
HPA Brain:
211.1
nTPM
GTEx:
357.2
nTPM
FANTOM5:
222.1
Scaled Tags Per Million
Mouse:
42.5
nTPM
Rat:
156.5
nTPM
Pig:
165.8
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
ND
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
ND
Spinal cord_03
ND
Spinal cord_04
ND
Spinal cord_05
ND
Spinal cord_06
ND
Spinal cord_07
ND
Spinal cord_08
ND
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
211.1
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 186.8
2193
Male, age 75, both hemispheres
204.2
2734
Male, age 80, both hemispheres
197.4
2818
Female, age 79, both hemispheres
179.4
2819
Male, age 47, both hemispheres
166.2
Cervical spinal cord, central gray nTPM: 110.1
1981
Female, age 72, midline
154.3
2816
Male, age 47, midline
109.4
2048
Male, age 55, midline
108.7
2194
Female, age 79, both hemispheres
107.2
2565
Male, age 75, midline
70.8
Cervical spinal cord, dorsal horn nTPM: 133.5
2296
Male, age 66, both hemispheres
232.3
2173
Female, age 72, unknown
217.3
2069
Male, age 47, both hemispheres
131.1
1877
Male, age 55, unknown
111.8
2721
Male, age 90, both hemispheres
58.9
2297
Male, age 75, both hemispheres
49.8
Cervical spinal cord, ventral horn nTPM: 129.3
2068
Male, age 55, unknown
161.6
2098
Female, age 72, unknown
158.7
2820
Female, age 79, both hemispheres
121.7
2809
Male, age 90, both hemispheres
113.6
2295
Male, age 66, both hemispheres
113.1
2480
Male, age 75, both hemispheres
107.4
Dorsal funiculus (white matter) nTPM: 211.1
2810
Male, age 90, both hemispheres
285.3
2128
Male, age 75, both hemispheres
216.5
2817
Male, age 47, both hemispheres
197.8
2812
Male, age 66, both hemispheres
184.6
2064
Female, age 79, both hemispheres
171.5
Lateral funiculus (white matter) nTPM: 200.6
2099
Male, age 90, both hemispheres
299.2
2094
Female, age 79, both hemispheres
197.7
2192
Male, age 75, both hemispheres
187.0
2294
Male, age 66, both hemispheres
118.4
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
357.2
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 357.2
Samples: 204
Max nTPM: 860.1
Min nTPM: 66.8
Std nTPM: 143.3
Median nTPM: 354.7
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
860.1
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
765.5
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
759.0
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
733.1
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
729.1
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
723.6
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
708.7
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
667.8
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
638.3
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
629.5
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
627.8
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
612.9
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
597.8
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
591.9
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
580.4
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
557.7
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
548.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
547.0
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
544.7
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
526.8
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
522.8
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
510.4
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
505.4
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
503.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
502.8
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
497.8
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
496.0
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
493.0
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
489.7
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
488.8
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
485.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
484.9
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
478.9
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
478.5
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
474.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
469.7
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
468.9
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
467.8
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
465.5
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
456.8
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
456.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
449.8
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
449.8
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
449.2
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
448.7
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
442.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
441.2
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
439.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
438.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
437.5
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
435.6
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
432.9
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
432.3
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
431.6
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
428.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
428.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
427.5
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
427.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
425.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
424.3
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
423.5
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
423.5
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
421.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
421.0
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
416.0
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
416.0
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
414.6
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
414.2
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
413.8
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
411.4
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
409.9
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
408.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
406.5
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
404.3
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
403.3
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
400.8
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
400.8
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
400.3
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
398.8
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
398.7
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
394.5
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
392.8
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
392.7
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
389.6
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
389.2
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
386.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
385.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
381.0
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
380.0
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
375.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
375.8
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
375.0
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
371.5
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
369.2
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
363.4
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
362.2
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
359.3
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
358.8
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
357.8
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
356.8
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
355.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
355.4
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
354.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
351.7
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
346.2
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
341.3
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
341.1
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
339.8
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
338.7
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
335.2
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
331.9
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
329.5
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
328.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
323.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
323.4
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
322.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
320.6
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
317.8
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
313.3
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
312.8
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
312.8
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
311.6
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
311.5
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
310.5
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
309.8
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
307.8
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
305.7
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
304.0
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
302.4
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
301.1
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
300.9
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
299.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
298.5
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
297.9
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
297.6
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
293.6
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
286.2
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
282.3
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
282.2
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
281.8
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
278.6
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
275.2
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
274.5
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
273.7
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
273.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
272.2
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
269.2
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
267.5
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
266.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
265.0
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
262.2
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
259.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
259.1
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
257.8
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
256.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
252.6
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
252.3
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
252.2
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
252.1
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
250.4
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
241.5
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
241.3
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
240.5
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
239.4
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
236.4
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
235.4
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
231.7
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
227.1
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
226.9
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
221.4
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
220.1
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
218.9
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
216.7
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
215.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
214.8
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
210.9
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
209.7
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
204.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
199.8
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
194.8
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
193.2
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
185.9
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
182.1
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
168.5
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
167.1
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
164.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
162.8
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
154.6
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
151.3
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
151.1
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
149.0
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
147.9
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
146.9
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
145.8
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
127.1
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
121.5
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
120.9
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
116.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
115.0
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
99.1
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
93.7
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
93.5
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
91.3
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
66.8
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
165.8
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 150.0
Samples: 4
Max nTPM: 159.5
Min nTPM: 137.7
Sample A
Female
137.7
Sample B
Female
149.5
Sample C
Male
159.5
Sample D
Male
153.4
Ventral spinal cord nTPM: 165.8
Samples: 4
Max nTPM: 204.2
Min nTPM: 141.8
Sample A
Female
173.9
Sample B
Female
141.8
Sample C
Male
143.1
Sample D
Male
204.2
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
42.5
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 42.5
Samples: 4
Max nTPM: 44.8
Min nTPM: 41.2
Sample A
42.1
Sample B
41.8
Sample C
44.8
Sample D
41.2
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
156.5
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 156.5
Samples: 4
Max nTPM: 177.8
Min nTPM: 124.0
Sample A
162.9
Sample A
177.8
Sample A
161.2
Sample A
124.0
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The Human Protein Atlas project is funded
