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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • PKM
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:353.7 nTPM
HPA Brain:534.0 nTPM
GTEx:353.7 nTPM
FANTOM5:841.8 Scaled Tags Per Million
Macaque:377.6 nTPM
Mouse:1049.7 nTPM
Rat:0.0 nTPM
Pig:716.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA029501Antibody CAB019421
Glial cells LowMedium
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 1176238
Sample Intensity
Hippocampal formation_01
1090644
Hippocampal formation_02
957781
Hippocampal formation_03
734054
Hippocampal formation_04
1261832
Hippocampal formation_05
1285880
Hippocampal formation_06
1419442

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

534.0
Sample id Sample description nTPM
Dentate gyrus
nTPM: 465.4
1927 Female, age 91, both hemispheres 548.5
2010 Male, age 76, both hemispheres 480.9
2528 Male, age 74, both hemispheres 476.2
2530 Female, age 94, left hemisphere 474.3
2246 Female, age 85, both hemispheres 442.7
2531 Female, age 67, both hemispheres 369.8
Entorhinal gyrus
nTPM: 442.7
2764 Male, age 80, right hemisphere 524.3
1938 Female, age 85, left hemisphere 461.2
2613 Female, age 94, left hemisphere 456.3
1787 Male, age 76, left hemisphere 413.8
2117 Female, age 91, right hemisphere 406.6
2686 Male, age 75, right hemisphere 393.8
Hippocampus, CA1
nTPM: 492.8
2749 Male, age 80, left hemisphere 581.3
2527 Male, age 74, both hemispheres 497.4
2082 Female, age 91, right hemisphere 480.7
1873 Female, age 85, both hemispheres 472.2
2045 Male, age 76, both hemispheres 432.4
Hippocampus, CA2
nTPM: 490.8
1892 Male, age 76, both hemispheres 616.7
2249 Male, age 74, both hemispheres 593.2
1963 Male, age 80, left hemisphere 489.5
2437 Female, age 94, left hemisphere 441.0
2113 Female, age 91, right hemisphere 408.9
1940 Female, age 85, left hemisphere 395.6
Hippocampus, CA3
nTPM: 512.7
2436 Male, age 74, both hemispheres 776.1
1867 Male, age 76, both hemispheres 500.5
2620 Female, age 94, left hemisphere 491.9
2137 Male, age 80, left hemisphere 486.1
2861 Female, age 67, both hemispheres 441.2
1891 Female, age 85, both hemispheres 380.3
Parahippocampal cortex
nTPM: 450.5
1850 Male, age 80, both hemispheres 537.2
2245 Female, age 91, both hemispheres 499.6
1990 Female, age 91, right hemisphere 478.7
2250 Female, age 67, right hemisphere 469.4
2532 Female, age 72, left hemisphere 453.7
1933 Female, age 85, both hemispheres 432.2
2622 Female, age 67, right hemisphere 418.0
2018 Male, age 76, both hemispheres 412.1
2692 Male, age 74, both hemispheres 408.4
2693 Female, age 94, both hemispheres 395.1
Perirhinal gyrus
nTPM: 534.0
1847 Female, age 91, left hemisphere 658.7
1794 Male, age 80, right hemisphere 586.8
1841 Female, age 85, right hemisphere 524.4
2521 Female, age 94, right hemisphere 465.3
2848 Male, age 76, right hemisphere 434.8
Subiculum
nTPM: 418.9
2438 Female, age 94, left hemisphere 466.4
2619 Male, age 74, both hemispheres 456.6
1901 Male, age 80, both hemispheres 444.2
1977 Female, age 85, both hemispheres 420.0
2729 Female, age 91, right hemisphere 391.2
2042 Male, age 76, both hemispheres 334.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

353.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 353.7
Samples: 255

Max nTPM: 652.8
Min nTPM: 153.1
Std nTPM: 91.3
Median nTPM: 350.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 652.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 652.5
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 625.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 557.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 554.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 553.5
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 545.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 541.6
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 528.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 526.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 520.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 520.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 519.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 515.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 509.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 501.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 496.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 496.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 495.1
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 485.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 484.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 484.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 482.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 480.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 475.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 474.2
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 472.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 471.7
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 469.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 463.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 459.6
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 459.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 452.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 451.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 451.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 446.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 445.6
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 441.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 440.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 440.1
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 440.0
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 438.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 436.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 435.1
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 431.4
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 430.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 430.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 428.9
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 427.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 425.8
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 425.7
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 425.6
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 424.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 422.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 420.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 419.3
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 419.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 418.2
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 414.8
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 414.0
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 413.7
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 411.8
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 411.4
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 410.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 410.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 408.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 408.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 406.0
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 403.9
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 403.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 402.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 400.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 399.3
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 398.7
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 398.0
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 397.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 396.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 393.2
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 392.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 391.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 388.8
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 388.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 388.5
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 388.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 385.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 384.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 382.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 382.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 381.3
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 381.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 379.4
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 379.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 379.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 378.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 376.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 375.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 374.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 373.2
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 372.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 369.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 368.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 368.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 368.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 367.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 366.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 366.4
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 366.0
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 365.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 365.1
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 363.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 363.5
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 363.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 362.8
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 361.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 360.9
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 357.7
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 357.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 356.4
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 354.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 353.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 353.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 352.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 352.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 352.6
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 352.0
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 351.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 351.1
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 350.9
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 350.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 350.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 350.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 349.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 349.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 349.2
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 349.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 346.3
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 346.3
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 346.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 346.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 343.7
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 339.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 339.1
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 337.2
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 335.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 333.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 332.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 332.7
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 332.3
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 330.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 330.0
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 327.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 327.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 326.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 326.6
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 326.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 325.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 325.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 325.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 324.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 324.0
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 323.4
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 322.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 321.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 321.3
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 321.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 319.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 318.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 317.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 317.1
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 316.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 316.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 316.0
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 315.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 313.1
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 312.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 308.4
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 308.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 306.4
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 303.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 303.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 302.9
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 301.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 300.0
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 299.6
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 298.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 298.5
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 297.9
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 297.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 293.5
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 293.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 293.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 292.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 291.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 291.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 290.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 290.0
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 288.6
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 288.1
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 283.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 281.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 280.4
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 279.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 279.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 278.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 278.4
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 278.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 277.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 277.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 276.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 275.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 274.9
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 274.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 274.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 273.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 273.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 272.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 271.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 266.0
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 265.2
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 264.9
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 262.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 255.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 254.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 252.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 250.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 249.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 246.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 246.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 240.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 236.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 235.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 231.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 226.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 224.0
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 220.3
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 220.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 218.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 217.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 211.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 207.2
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 204.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 203.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 201.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 200.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 198.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 191.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 190.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 180.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 176.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 175.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 172.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 166.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 158.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 155.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 153.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

841.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 841.8
FF:10169-103B7 60 years, female 1158.0
FF:10153-102I9 76 years, female 525.6

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

377.6
Macaque sample Sample description nTPM
Subiculum
nTPM: 340.0
Samples: 1

Max nTPM: 340.0
Min nTPM: 340.0
Sample A 340.0
Entorhinal cortex
nTPM: 363.9
Samples: 2

Max nTPM: 374.7
Min nTPM: 353.1
Sample A 374.7
Sample B 353.1
Hippocampal formation
nTPM: 377.6
Samples: 4

Max nTPM: 478.2
Min nTPM: 279.9
Sample A 355.3
Sample B 279.9
Sample C 396.9
Sample D 478.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

716.5
Pig sample Sample description nTPM
Subiculum
nTPM: 592.9
Samples: 4

Max nTPM: 736.1
Min nTPM: 515.4
Sample A Female 736.1
Sample B Female 521.9
Sample C Male 598.0
Sample D Male 515.4
Dorsal hippocampus
nTPM: 690.2
Samples: 4

Max nTPM: 835.1
Min nTPM: 547.2
Sample A Female 835.1
Sample B Female 736.3
Sample C Male 642.1
Sample D Male 547.2
Entorhinal cortex
nTPM: 640.0
Samples: 4

Max nTPM: 706.3
Min nTPM: 579.2
Sample A Female 706.3
Sample B Female 664.2
Sample C Male 610.4
Sample D Male 579.2
Ventral hippocampus
nTPM: 716.5
Samples: 4

Max nTPM: 860.4
Min nTPM: 453.4
Sample A Female 794.3
Sample B Female 453.4
Sample C Male 860.4
Sample D Male 757.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1049.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 951.2
Samples: 4

Max nTPM: 963.1
Min nTPM: 939.3
Sample A 939.3
Sample B 949.1
Sample C 953.2
Sample D 963.1
Hippocampal formation
nTPM: 1049.7
Samples: 4

Max nTPM: 1086.2
Min nTPM: 986.3
Sample A 1086.2
Sample B 1057.8
Sample C 1068.3
Sample D 986.3

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.0
Sample B 0.0
Ventral hippocampus
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.1
Sample A 0.0

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