BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:453.4 nTPM
HPA Brain:597.5 nTPM
GTEx:453.4 nTPM
FANTOM5:381.9 Scaled Tags Per Million
Macaque:489.7 nTPM
Mouse:1075.3 nTPM
Rat:0.0 nTPM
Pig:796.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 597.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 529.2
2019 Male, age 18, unknown 679.3
2586 Male, age 75, left hemisphere 638.5
1827 Male, age 72, unknown 613.6
2666 Male, age 74, left hemisphere 589.5
2828 Female, age 72, unknown 564.8
2411 Female, age 72, unknown 515.3
2219 Male, age 76, both hemispheres 443.6
1833 Male, age 53, unknown 430.2
1870 Female, age 42, unknown 425.9
1830 Male, age 51, unknown 391.3
Dorsal raphe nucleus
nTPM: 554.6
2298 Female, age 72, unknown 654.9
1828 Male, age 53, unknown 619.0
2047 Male, age 72, unknown 583.0
2750 Male, age 76, both hemispheres 472.8
2016 Female, age 72, unknown 443.1
Inferior colliculus
nTPM: 497.4
2097 Female, age 72, unknown 533.7
1890 Male, age 53, unknown 509.7
1848 Female, age 42, unknown 501.7
2849 Male, age 72, unknown 444.7
Median raphe nucleus
nTPM: 507.9
2220 Male, age 76, midline 507.9
Periaquaductal grey, anterior
nTPM: 530.2
1795 Male, age 51, unknown 589.2
1947 Male, age 18, unknown 520.9
2502 Female, age 75, unknown 480.5
Periaquaductal grey, dorsal
nTPM: 451.5
2850 Male, age 76, both hemispheres 505.8
2464 Female, age 72, unknown 443.6
1840 Male, age 53, unknown 432.8
1831 Male, age 72, unknown 423.8
Periaquaductal grey, lateral
nTPM: 473.2
2272 Male, age 74, both hemispheres 569.9
2140 Male, age 76, both hemispheres 443.8
2053 Male, age 18, unknown 406.0
Pretectal area
nTPM: 595.4
1817 Female, age 42, unknown 841.1
1816 Male, age 51, unknown 818.8
2007 Male, age 72, unknown 802.5
1944 Female, age 72, unknown 741.4
1815 Male, age 53, unknown 626.1
2667 Female, age 75, unknown 553.9
2273 Male, age 74, both hemispheres 535.3
2224 Female, age 72, unknown 471.1
2825 Male, age 18, unknown 423.9
2316 Male, age 76, right hemisphere 370.4
2407 Male, age 75, both hemispheres 364.8
Red nucleus
nTPM: 491.1
2785 Male, age 18, unknown 632.0
1821 Female, age 72, unknown 579.4
2725 Female, age 75, unknown 567.9
2588 Male, age 74, left hemisphere 540.3
2503 Female, age 72, unknown 482.1
1954 Female, age 42, unknown 472.2
2823 Male, age 76, right hemisphere 462.4
1865 Male, age 51, unknown 458.6
2769 Male, age 72, unknown 455.1
2227 Male, age 72, unknown 448.3
1904 Male, age 53, unknown 413.2
2584 Male, age 75, left hemisphere 381.3
Substantia nigra
nTPM: 597.5
1916 Female, age 42, unknown 848.1
1941 Male, age 53, unknown 733.3
1889 Female, age 72, unknown 687.7
1851 Male, age 51, unknown 638.7
2241 Male, age 72, unknown 568.3
2665 Male, age 74, both hemispheres 539.7
2590 Female, age 75, unknown 512.3
2699 Male, age 18, unknown 484.9
2583 Male, age 75, right hemisphere 481.2
2409 Female, age 72, unknown 480.9
Superior colliculus
nTPM: 485.9
2087 Female, age 72, unknown 641.7
1796 Male, age 53, unknown 553.6
2261 Male, age 18, unknown 538.2
2668 Female, age 75, unknown 532.4
2587 Male, age 74, left hemisphere 485.5
1895 Male, age 76, right hemisphere 450.2
1839 Male, age 51, unknown 438.8
2664 Male, age 75, both hemispheres 430.5
1913 Female, age 42, unknown 402.8
1995 Male, age 72, unknown 385.4
Ventral tegmental area
nTPM: 502.1
1915 Female, age 42, unknown 601.2
2410 Female, age 72, unknown 579.3
2218 Male, age 76, both hemispheres 560.4
1942 Male, age 51, unknown 438.1
2223 Female, age 72, unknown 434.2
2021 Male, age 53, unknown 399.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 453.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 453.4
Samples: 183

Max nTPM: 1247.4
Min nTPM: 148.3
Std nTPM: 171.9
Median nTPM: 428.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1247.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1220.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1024.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 786.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 772.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 766.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 755.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 744.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 728.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 721.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 712.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 381.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 381.9
FF:10158-103A5 76 years, female 381.9

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 489.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 343.4
Samples: 1

Max nTPM: 343.4
Min nTPM: 343.4
Sample A 343.4
Midbrain
nTPM: 341.0
Samples: 1

Max nTPM: 341.0
Min nTPM: 341.0
Sample A 341.0
Superior colliculi
nTPM: 489.7
Samples: 1

Max nTPM: 489.7
Min nTPM: 489.7
Sample A 489.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 796.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 610.6
Samples: 3

Max nTPM: 752.8
Min nTPM: 404.1
Sample A Female 752.8
Sample B Female 404.1
Sample C Male 674.8
Midbrain
nTPM: 719.5
Samples: 3

Max nTPM: 903.1
Min nTPM: 476.4
Sample B Female 476.4
Sample C Male 903.1
Sample D Male 778.9
Periaqueductal gray
nTPM: 460.7
Samples: 3

Max nTPM: 541.8
Min nTPM: 388.7
Sample B Female 451.5
Sample C Male 541.8
Sample D Male 388.7
Superior colliculi
nTPM: 796.5
Samples: 4

Max nTPM: 995.4
Min nTPM: 502.1
Sample A Female 884.6
Sample B Female 502.1
Sample C Male 995.4
Sample D Male 804.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1075.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 1075.3
Samples: 4

Max nTPM: 1180.4
Min nTPM: 1023.0
Sample A 1028.8
Sample B 1180.4
Sample C 1069.0
Sample D 1023.0

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 0.0
Rat sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.0
Sample A 0.0

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