MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.3 nTPM
HPA Brain:72.6 nTPM
GTEx:68.3 nTPM
FANTOM5:144.4 Scaled Tags Per Million
Pig:45.6 nTPM
Mouse:92.3 nTPM
Allen mouse:11.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 72.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.9
2586 Male, age 75, left hemisphere 74.3
2219 Male, age 76, both hemispheres 72.8
2019 Male, age 18, unknown 68.2
1830 Male, age 51, unknown 66.6
1827 Male, age 72, unknown 65.3
2411 Female, age 72, unknown 63.7
2666 Male, age 74, left hemisphere 63.7
1870 Female, age 42, unknown 62.9
1833 Male, age 53, unknown 62.8
2828 Female, age 72, unknown 58.3
Dorsal raphe nucleus
nTPM: 44.8
2750 Male, age 76, both hemispheres 55.1
1828 Male, age 53, unknown 51.4
2047 Male, age 72, unknown 39.8
2298 Female, age 72, unknown 39.5
2016 Female, age 72, unknown 38.0
Inferior colliculus
nTPM: 59.4
2849 Male, age 72, unknown 76.2
1848 Female, age 42, unknown 57.7
1890 Male, age 53, unknown 55.5
2097 Female, age 72, unknown 48.0
Median raphe nucleus
nTPM: 58.2
2220 Male, age 76, midline 58.2
Periaquaductal grey, anterior
nTPM: 53.1
1795 Male, age 51, unknown 56.6
1947 Male, age 18, unknown 51.3
2502 Female, age 75, unknown 51.3
Periaquaductal grey, dorsal
nTPM: 49.3
2464 Female, age 72, unknown 54.0
2850 Male, age 76, both hemispheres 48.6
1840 Male, age 53, unknown 48.5
1831 Male, age 72, unknown 46.0
Periaquaductal grey, lateral
nTPM: 53.8
2272 Male, age 74, both hemispheres 59.3
2053 Male, age 18, unknown 53.1
2140 Male, age 76, both hemispheres 49.1
Pretectal area
nTPM: 62.9
2007 Male, age 72, unknown 80.0
1817 Female, age 42, unknown 73.7
1816 Male, age 51, unknown 73.2
1944 Female, age 72, unknown 71.5
1815 Male, age 53, unknown 70.2
2667 Female, age 75, unknown 64.8
2407 Male, age 75, both hemispheres 61.6
2825 Male, age 18, unknown 54.9
2316 Male, age 76, right hemisphere 50.5
2273 Male, age 74, both hemispheres 47.4
2224 Female, age 72, unknown 44.6
Red nucleus
nTPM: 72.6
2785 Male, age 18, unknown 83.5
2588 Male, age 74, left hemisphere 83.4
2227 Male, age 72, unknown 77.5
1865 Male, age 51, unknown 75.0
2725 Female, age 75, unknown 73.5
2769 Male, age 72, unknown 73.4
1904 Male, age 53, unknown 72.8
2503 Female, age 72, unknown 68.9
2823 Male, age 76, right hemisphere 68.0
2584 Male, age 75, left hemisphere 67.5
1954 Female, age 42, unknown 65.7
1821 Female, age 72, unknown 62.0
Substantia nigra
nTPM: 56.8
1916 Female, age 42, unknown 68.0
1889 Female, age 72, unknown 65.9
2665 Male, age 74, both hemispheres 63.8
2409 Female, age 72, unknown 63.4
2583 Male, age 75, right hemisphere 62.2
1851 Male, age 51, unknown 57.3
2699 Male, age 18, unknown 53.7
1941 Male, age 53, unknown 51.2
2590 Female, age 75, unknown 51.1
2241 Male, age 72, unknown 31.5
Superior colliculus
nTPM: 62.9
1995 Male, age 72, unknown 72.0
1796 Male, age 53, unknown 69.0
2668 Female, age 75, unknown 66.4
1913 Female, age 42, unknown 65.6
2261 Male, age 18, unknown 63.7
2587 Male, age 74, left hemisphere 61.8
2087 Female, age 72, unknown 59.8
1895 Male, age 76, right hemisphere 59.0
1839 Male, age 51, unknown 57.4
2664 Male, age 75, both hemispheres 54.2
Ventral tegmental area
nTPM: 59.4
2218 Male, age 76, both hemispheres 72.6
2223 Female, age 72, unknown 72.6
2410 Female, age 72, unknown 61.6
1915 Female, age 42, unknown 53.9
2021 Male, age 53, unknown 48.8
1942 Male, age 51, unknown 46.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 68.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.3
Samples: 183

Max nTPM: 170.8
Min nTPM: 15.0
Std nTPM: 22.8
Median nTPM: 65.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 170.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 139.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 121.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 121.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 119.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 119.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 115.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 113.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 110.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 109.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 107.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 144.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 144.4
FF:10158-103A5 76 years, female 144.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 49.3
Min nTPM: 19.1
Sample A Female 49.3
Sample B Female 26.6
Sample C Male 42.7
Sample D Male 19.1
Midbrain
nTPM: 45.6
Samples: 4

Max nTPM: 74.6
Min nTPM: 31.3
Sample A Female 37.5
Sample B Female 31.3
Sample C Male 74.6
Sample D Male 39.1
Periaqueductal gray
nTPM: 34.2
Samples: 3

Max nTPM: 44.8
Min nTPM: 27.2
Sample B Female 27.2
Sample C Male 44.8
Sample D Male 30.5
Superior colliculi
nTPM: 41.2
Samples: 4

Max nTPM: 43.8
Min nTPM: 36.5
Sample A Female 43.8
Sample B Female 41.7
Sample C Male 42.9
Sample D Male 36.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 92.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.3
Samples: 4

Max nTPM: 100.3
Min nTPM: 85.9
Sample A Male 100.3
Sample B Male 86.1
Sample C Female 85.9
Sample D Female 96.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.1
76081947 Antisense, RP_060626_01_B05, Mouse strain C57BL/6J (56 days, male) 11.1

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