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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:85.5 nTPM
HPA Brain:62.0 nTPM
GTEx:85.5 nTPM
FANTOM5:122.2 Scaled Tags Per Million
Pig:34.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 49.9
2194 Female, age 79, both hemispheres 62.0
2816 Male, age 47, midline 54.2
1981 Female, age 72, midline 54.0
2565 Male, age 75, midline 42.6
2048 Male, age 55, midline 36.9
Cervical spinal cord, dorsal horn
nTPM: 59.0
2296 Male, age 66, both hemispheres 75.2
2721 Male, age 90, both hemispheres 61.8
2173 Female, age 72, unknown 60.1
2069 Male, age 47, both hemispheres 54.7
2297 Male, age 75, both hemispheres 52.3
1877 Male, age 55, unknown 49.8
Cervical spinal cord, ventral horn
nTPM: 62.0
2295 Male, age 66, both hemispheres 75.0
2820 Female, age 79, both hemispheres 66.0
2068 Male, age 55, unknown 65.1
2480 Male, age 75, both hemispheres 60.2
2809 Male, age 90, both hemispheres 56.5
2098 Female, age 72, unknown 49.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 85.5
Samples: 204

Max nTPM: 157.1
Min nTPM: 15.5
Std nTPM: 30.0
Median nTPM: 87.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 157.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 147.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 147.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 146.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 146.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 145.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 143.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 141.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 137.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 135.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 134.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 133.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 132.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 130.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 129.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 127.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 127.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 126.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 126.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 125.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 122.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 121.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 121.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 120.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 119.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 119.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 118.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 118.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 115.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 115.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 115.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 114.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 114.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 113.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 113.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 113.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 113.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 112.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 112.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 111.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 110.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 110.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 109.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 109.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 108.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 108.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 108.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 108.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 107.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 107.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 106.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 105.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 105.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 105.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 104.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 104.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 104.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 102.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 102.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 102.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 102.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 101.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 101.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 100.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 100.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 100.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 100.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 100.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 99.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 99.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 99.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 98.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 98.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 98.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 98.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 97.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 97.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 97.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 96.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 96.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 96.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 95.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 95.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 95.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 94.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 94.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 94.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 94.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 92.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 92.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 91.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 90.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 90.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 90.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 90.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 90.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 90.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 90.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 88.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 88.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 88.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 88.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 86.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 86.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 85.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 85.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 85.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 85.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 84.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 83.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 83.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 83.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 83.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 83.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 83.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 83.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 82.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 82.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 82.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 82.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 81.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 80.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 80.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 80.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 79.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 79.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 79.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 79.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 78.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 77.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 75.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 75.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 75.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 74.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 73.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 73.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 72.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 72.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 72.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 72.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 72.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 71.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 71.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 69.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 69.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 69.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 68.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 68.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 67.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 64.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 64.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 63.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 63.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 63.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 62.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 61.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 60.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 60.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 59.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 59.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 58.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 58.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 58.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 58.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 58.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 56.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 53.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 52.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 52.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 51.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 50.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 50.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 50.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 49.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 49.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 49.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 47.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 47.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 47.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 46.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 46.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 45.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 44.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 44.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 43.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 43.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 42.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 42.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 41.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 38.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 37.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 33.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 33.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 32.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 31.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 30.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 30.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 30.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 29.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 25.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 24.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 21.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 19.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 15.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

122.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 122.2
FF:10181-103D1 60 years, female 171.2
FF:10159-103A6 76 years, female 73.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 27.4
Samples: 4

Max nTPM: 33.2
Min nTPM: 20.0
Sample A Female 33.2
Sample B Female 24.5
Sample C Male 20.0
Sample D Male 31.7
Ventral spinal cord
nTPM: 34.6
Samples: 4

Max nTPM: 38.3
Min nTPM: 28.2
Sample A Female 38.3
Sample B Female 37.3
Sample C Male 34.5
Sample D Male 28.2

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