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  • PFN2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:251.8 nTPM
HPA Brain:230.3 nTPM
GTEx:251.8 nTPM
FANTOM5:231.5 Scaled Tags Per Million
Pig:280.3 nTPM
Mouse:489.6 nTPM
Allen mouse:16.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.3
Sample id Sample description nTPM
Amygdala
nTPM: 209.0
2514 Male, age 75, right hemisphere 259.2
1987 Female, age 91, left hemisphere 253.2
2517 Female, age 94, left hemisphere 215.2
2814 Male, age 76, right hemisphere 170.0
2695 Female, age 67, right hemisphere 147.1
Basal amygdala
nTPM: 209.2
2609 Male, age 75, right hemisphere 245.2
2110 Male, age 80, left hemisphere 239.5
2243 Female, age 91, right hemisphere 231.1
2685 Female, age 94, left hemisphere 228.1
1955 Male, age 76, both hemispheres 177.6
2827 Female, age 67, right hemisphere 133.9
Central amygdala
nTPM: 201.1
2515 Male, age 75, right hemisphere 253.4
2826 Female, age 94, left hemisphere 223.7
2239 Male, age 80, left hemisphere 211.1
2701 Female, age 91, right hemisphere 174.2
1905 Male, age 76, both hemispheres 143.2
Corticomedial amygdala
nTPM: 230.3
2829 Male, age 80, left hemisphere 276.0
2242 Female, age 91, right hemisphere 262.1
2428 Male, age 75, right hemisphere 250.1
2429 Female, age 94, left hemisphere 232.0
2240 Male, age 76, both hemispheres 183.5
2535 Female, age 67, right hemisphere 177.9
Lateral amygdala
nTPM: 185.6
2534 Female, age 94, left hemisphere 252.4
2516 Male, age 75, right hemisphere 212.8
2256 Male, age 80, left hemisphere 192.1
1883 Male, age 76, both hemispheres 185.4
2255 Female, age 91, right hemisphere 158.5
2830 Female, age 67, right hemisphere 112.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 251.8
Samples: 181

Max nTPM: 707.3
Min nTPM: 104.6
Std nTPM: 89.0
Median nTPM: 239.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 707.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 569.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 543.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 482.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 459.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 457.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 446.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 420.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 396.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 389.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 389.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 385.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 379.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 369.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 363.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 362.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 360.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 357.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 355.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 354.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 353.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 346.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 346.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 345.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 339.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 335.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 330.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 330.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 329.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 328.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 327.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 324.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 322.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 320.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 317.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 313.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 309.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 309.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 307.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 305.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 305.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 305.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 305.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 301.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 301.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 300.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 296.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 295.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 294.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 291.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 290.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 289.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 289.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 287.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 287.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 281.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 281.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 281.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 280.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 279.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 276.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 275.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 274.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 274.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 273.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 270.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 267.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 265.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 263.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 263.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 263.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 263.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 259.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 259.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 259.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 258.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 257.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 256.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 256.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 254.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 253.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 251.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 250.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 249.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 248.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 247.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 243.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 243.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 240.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 240.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 239.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 239.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 238.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 237.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 236.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 234.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 233.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 231.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 231.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 230.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 230.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 228.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 225.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 218.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 217.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 216.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 216.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 215.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 215.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 215.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 213.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 211.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 211.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 210.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 207.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 206.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 206.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 206.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 205.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 205.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 202.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 201.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 200.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 200.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 200.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 200.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 200.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 200.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 198.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 198.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 197.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 193.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 192.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 192.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 190.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 189.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 188.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 185.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 183.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 183.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 183.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 183.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 182.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 181.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 180.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 179.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 178.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 177.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 175.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 173.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 172.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 172.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 170.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 170.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 169.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 168.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 167.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 165.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 163.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 163.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 160.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 157.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 155.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 155.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 154.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 154.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 154.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 147.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 146.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 138.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 134.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 129.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 128.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 127.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 125.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 123.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 121.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 119.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 114.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 111.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 104.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

231.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 231.5
FF:10151-102I7 76 years, female 231.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

280.3
Pig sample Sample description nTPM
Amygdala
nTPM: 280.3
Samples: 4

Max nTPM: 380.9
Min nTPM: 223.0
Sample A Female 380.9
Sample B Female 267.0
Sample C Male 223.0
Sample D Male 250.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

489.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 489.7
Samples: 4

Max nTPM: 512.0
Min nTPM: 467.8
Sample A Male 494.0
Sample B Male 512.0
Sample C Female 467.8
Sample D Female 484.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.8
1261 Antisense, RP_040324_01_F06, Mouse strain C57BL/6J (56 days, male) 16.8
1262 Antisense, RP_040324_01_F06, Mouse strain C57BL/6J (56 days, male) 14.9

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