MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.9 nTPM
HPA Brain:58.0 nTPM
GTEx:29.9 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:104.5 nTPM
Allen mouse:4.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 58.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.8
2666 Male, age 74, left hemisphere 61.0
2019 Male, age 18, unknown 59.3
1827 Male, age 72, unknown 57.1
2411 Female, age 72, unknown 53.5
2219 Male, age 76, both hemispheres 49.0
2586 Male, age 75, left hemisphere 42.3
1833 Male, age 53, unknown 42.2
2828 Female, age 72, unknown 41.7
1870 Female, age 42, unknown 41.5
1830 Male, age 51, unknown 40.1
Dorsal raphe nucleus
nTPM: 51.4
2750 Male, age 76, both hemispheres 59.0
2298 Female, age 72, unknown 56.7
2047 Male, age 72, unknown 55.3
1828 Male, age 53, unknown 49.9
2016 Female, age 72, unknown 36.1
Inferior colliculus
nTPM: 50.5
2097 Female, age 72, unknown 63.0
1890 Male, age 53, unknown 48.2
1848 Female, age 42, unknown 47.2
2849 Male, age 72, unknown 43.5
Median raphe nucleus
nTPM: 58.0
2220 Male, age 76, midline 58.0
Periaquaductal grey, anterior
nTPM: 54.1
2502 Female, age 75, unknown 56.0
1795 Male, age 51, unknown 54.1
1947 Male, age 18, unknown 52.2
Periaquaductal grey, dorsal
nTPM: 43.5
2464 Female, age 72, unknown 45.6
2850 Male, age 76, both hemispheres 44.4
1840 Male, age 53, unknown 42.6
1831 Male, age 72, unknown 41.5
Periaquaductal grey, lateral
nTPM: 41.8
2272 Male, age 74, both hemispheres 43.0
2140 Male, age 76, both hemispheres 41.5
2053 Male, age 18, unknown 41.0
Pretectal area
nTPM: 57.2
1816 Male, age 51, unknown 77.4
2007 Male, age 72, unknown 76.7
1944 Female, age 72, unknown 75.8
1817 Female, age 42, unknown 67.7
1815 Male, age 53, unknown 60.7
2224 Female, age 72, unknown 53.8
2407 Male, age 75, both hemispheres 51.2
2316 Male, age 76, right hemisphere 44.5
2825 Male, age 18, unknown 43.1
2667 Female, age 75, unknown 40.3
2273 Male, age 74, both hemispheres 38.7
Red nucleus
nTPM: 40.2
2785 Male, age 18, unknown 53.8
1821 Female, age 72, unknown 47.7
2823 Male, age 76, right hemisphere 44.6
2588 Male, age 74, left hemisphere 43.0
2584 Male, age 75, left hemisphere 42.4
1954 Female, age 42, unknown 40.2
2227 Male, age 72, unknown 37.5
2725 Female, age 75, unknown 37.4
2769 Male, age 72, unknown 36.3
2503 Female, age 72, unknown 34.3
1865 Male, age 51, unknown 34.2
1904 Male, age 53, unknown 31.5
Substantia nigra
nTPM: 54.9
1941 Male, age 53, unknown 75.3
1916 Female, age 42, unknown 67.9
1889 Female, age 72, unknown 65.6
2241 Male, age 72, unknown 63.8
1851 Male, age 51, unknown 57.9
2409 Female, age 72, unknown 55.9
2590 Female, age 75, unknown 48.2
2583 Male, age 75, right hemisphere 42.7
2699 Male, age 18, unknown 39.8
2665 Male, age 74, both hemispheres 32.3
Superior colliculus
nTPM: 51.9
2668 Female, age 75, unknown 78.6
2087 Female, age 72, unknown 67.3
1895 Male, age 76, right hemisphere 55.2
2261 Male, age 18, unknown 55.2
1796 Male, age 53, unknown 53.2
1839 Male, age 51, unknown 48.4
2587 Male, age 74, left hemisphere 46.0
2664 Male, age 75, both hemispheres 44.4
1913 Female, age 42, unknown 37.9
1995 Male, age 72, unknown 32.8
Ventral tegmental area
nTPM: 47.9
2410 Female, age 72, unknown 54.8
1915 Female, age 42, unknown 54.5
2218 Male, age 76, both hemispheres 49.6
1942 Male, age 51, unknown 45.4
2021 Male, age 53, unknown 45.0
2223 Female, age 72, unknown 37.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.9
Samples: 183

Max nTPM: 134.4
Min nTPM: 7.2
Std nTPM: 17.8
Median nTPM: 25.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 134.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 105.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 87.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 71.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 69.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 69.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 66.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 66.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 63.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 60.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.1
FF:10158-103A5 76 years, female 55.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.3
Samples: 4

Max nTPM: 28.4
Min nTPM: 9.4
Sample A Female 28.4
Sample B Female 15.2
Sample C Male 24.0
Sample D Male 9.4
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 27.4
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 17.4
Sample C Male 27.4
Sample D Male 24.1
Periaqueductal gray
nTPM: 16.6
Samples: 3

Max nTPM: 21.0
Min nTPM: 14.3
Sample B Female 14.4
Sample C Male 21.0
Sample D Male 14.3
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 27.4
Min nTPM: 11.9
Sample A Female 27.4
Sample B Female 11.9
Sample C Male 24.2
Sample D Male 17.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 104.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.5
Samples: 4

Max nTPM: 105.7
Min nTPM: 101.7
Sample A Male 101.7
Sample B Male 105.2
Sample C Female 105.4
Sample D Female 105.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
74047788 Antisense, RP_051214_02_A04, Mouse strain C57BL/6J (56 days, male) 7.5
68269034 Antisense, RP_041208_01_E09, Mouse strain C57BL/6J (56 days, male) 2.3

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