On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
23.0
nTPM
HPA Brain:
57.9
nTPM
GTEx:
23.0
nTPM
FANTOM5:
59.1
Scaled Tags Per Million
Macaque:
49.7
nTPM
Mouse:
48.6
nTPM
Rat:
44.2
nTPM
Pig:
19.9
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
3742
Sample
Intensity
Spinal cord_01
2738
Spinal cord_02
3707
Spinal cord_03
2969
Spinal cord_04
14056
Spinal cord_05
4444
Spinal cord_06
1676
Spinal cord_07
3776
Spinal cord_08
9751
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
57.9
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 47.1
2819
Male, age 47, both hemispheres
60.6
2193
Male, age 75, both hemispheres
46.8
2734
Male, age 80, both hemispheres
41.6
2818
Female, age 79, both hemispheres
39.6
Cervical spinal cord, central gray nTPM: 49.8
2565
Male, age 75, midline
57.0
2194
Female, age 79, both hemispheres
54.7
2048
Male, age 55, midline
47.8
1981
Female, age 72, midline
46.4
2816
Male, age 47, midline
43.0
Cervical spinal cord, dorsal horn nTPM: 57.9
2296
Male, age 66, both hemispheres
78.1
2069
Male, age 47, both hemispheres
58.1
2721
Male, age 90, both hemispheres
58.1
2297
Male, age 75, both hemispheres
54.9
2173
Female, age 72, unknown
51.0
1877
Male, age 55, unknown
47.0
Cervical spinal cord, ventral horn nTPM: 40.2
2820
Female, age 79, both hemispheres
56.9
2068
Male, age 55, unknown
54.1
2480
Male, age 75, both hemispheres
39.3
2098
Female, age 72, unknown
34.2
2809
Male, age 90, both hemispheres
30.9
2295
Male, age 66, both hemispheres
26.0
Dorsal funiculus (white matter) nTPM: 46.2
2812
Male, age 66, both hemispheres
54.2
2128
Male, age 75, both hemispheres
52.8
2810
Male, age 90, both hemispheres
50.2
2817
Male, age 47, both hemispheres
39.5
2064
Female, age 79, both hemispheres
34.2
Lateral funiculus (white matter) nTPM: 42.9
2192
Male, age 75, both hemispheres
49.8
2099
Male, age 90, both hemispheres
47.4
2294
Male, age 66, both hemispheres
38.5
2094
Female, age 79, both hemispheres
35.9
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.0
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 23.0
Samples: 204
Max nTPM: 87.1
Min nTPM: 8.1
Std nTPM: 9.5
Median nTPM: 21.2
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
87.1
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
60.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
56.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
54.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
48.6
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
46.2
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
45.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
44.9
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
43.0
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
40.3
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
39.0
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
38.7
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
35.9
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
35.6
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
35.2
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
35.0
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
34.5
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
33.6
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
33.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
33.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
32.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
32.3
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
32.2
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
31.7
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
31.7
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
31.5
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
31.5
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
31.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
31.2
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
30.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
30.5
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
30.4
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
30.2
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
30.2
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
29.9
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
29.7
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
29.5
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
29.5
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
29.3
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
28.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
28.3
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
28.3
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
27.9
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
27.4
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
27.1
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
27.0
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
27.0
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
26.6
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
26.5
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
25.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
25.9
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
25.8
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
25.7
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
25.6
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
25.5
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
25.5
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
25.3
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
25.3
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
25.3
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
25.3
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
25.2
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
25.1
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
25.1
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
25.1
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
25.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
25.0
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
25.0
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
24.8
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
24.6
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
24.5
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
24.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
24.1
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
24.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
24.0
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
23.8
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
23.7
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
23.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
23.4
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
23.3
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
23.3
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
23.2
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
23.2
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
23.1
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
23.1
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
22.8
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
22.7
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
22.7
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
22.6
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
22.6
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
22.4
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
22.2
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
22.2
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
22.1
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
22.0
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
22.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
21.9
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
21.9
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
21.6
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
21.6
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
21.4
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
21.4
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
21.2
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
21.2
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
21.1
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
21.1
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
20.9
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
20.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
20.7
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
20.4
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
20.1
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
20.1
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
20.0
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
20.0
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
19.9
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
19.8
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
19.7
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
19.7
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
19.6
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
19.6
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
19.5
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
19.4
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
19.2
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
19.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
19.0
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
18.9
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
18.8
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
18.7
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
18.5
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
18.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
18.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
18.5
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
18.5
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
18.4
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
18.1
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
18.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
18.1
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
18.0
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
18.0
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
17.9
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
17.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
17.7
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
17.7
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
17.6
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
17.5
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
17.4
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
17.3
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
17.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
17.2
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
17.1
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
17.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
17.0
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
16.9
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
16.9
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
16.9
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
16.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
16.7
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
16.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
16.4
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
16.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
16.3
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
16.2
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
16.2
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
16.2
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
16.2
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
16.1
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
15.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
15.9
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
15.8
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
15.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
15.6
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
15.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
15.2
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
15.0
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
14.9
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
14.9
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
14.8
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
14.7
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
14.7
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
14.7
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
14.5
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
14.4
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
14.4
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
14.3
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
14.0
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
13.9
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
13.8
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
13.6
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
13.6
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
13.5
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
13.5
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
13.3
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
13.3
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
12.8
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
12.7
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
12.7
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
12.7
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
12.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
12.2
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
12.1
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
11.6
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
11.4
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
11.1
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
11.1
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
8.1
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
49.7
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 47.4
Samples: 2
Max nTPM: 52.5
Min nTPM: 42.3
Sample A
42.3
Sample B
52.5
Ventral spinal cord nTPM: 49.7
Samples: 1
Max nTPM: 49.7
Min nTPM: 49.7
Sample A
49.7
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.9
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 15.0
Samples: 4
Max nTPM: 18.9
Min nTPM: 12.2
Sample A
Female
18.9
Sample B
Female
12.3
Sample C
Male
12.2
Sample D
Male
16.4
Ventral spinal cord nTPM: 19.9
Samples: 4
Max nTPM: 21.5
Min nTPM: 16.5
Sample A
Female
21.4
Sample B
Female
21.5
Sample C
Male
20.3
Sample D
Male
16.5
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.6
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 48.7
Samples: 4
Max nTPM: 51.8
Min nTPM: 43.4
Sample A
51.8
Sample B
43.4
Sample C
48.5
Sample D
50.9
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.2
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 44.2
Samples: 4
Max nTPM: 47.1
Min nTPM: 39.8
Sample A
47.1
Sample A
44.4
Sample A
45.5
Sample A
39.8
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The Human Protein Atlas project is funded
