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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:346.1 nTPM
HPA Brain:795.7 nTPM
GTEx:346.1 nTPM
FANTOM5:577.9 Scaled Tags Per Million
Pig:716.5 nTPM
Mouse:1280.6 nTPM
Allen mouse:24.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

795.7
Sample id Sample description nTPM
Amygdala
nTPM: 364.9
2517 Female, age 94, left hemisphere 677.2
1987 Female, age 91, left hemisphere 455.9
2514 Male, age 75, right hemisphere 334.0
2814 Male, age 76, right hemisphere 285.0
2695 Female, age 67, right hemisphere 72.6
Basal amygdala
nTPM: 795.7
2685 Female, age 94, left hemisphere 1046.2
2243 Female, age 91, right hemisphere 953.9
2827 Female, age 67, right hemisphere 917.8
2110 Male, age 80, left hemisphere 736.7
2609 Male, age 75, right hemisphere 675.7
1955 Male, age 76, both hemispheres 444.1
Central amygdala
nTPM: 477.1
2826 Female, age 94, left hemisphere 965.9
2239 Male, age 80, left hemisphere 613.2
2515 Male, age 75, right hemisphere 318.1
2701 Female, age 91, right hemisphere 255.5
1905 Male, age 76, both hemispheres 232.9
Corticomedial amygdala
nTPM: 722.7
2535 Female, age 67, right hemisphere 886.8
2829 Male, age 80, left hemisphere 865.4
2429 Female, age 94, left hemisphere 786.5
2242 Female, age 91, right hemisphere 755.3
2428 Male, age 75, right hemisphere 640.3
2240 Male, age 76, both hemispheres 401.8
Lateral amygdala
nTPM: 559.0
2534 Female, age 94, left hemisphere 1144.3
2256 Male, age 80, left hemisphere 703.9
2255 Female, age 91, right hemisphere 525.0
2830 Female, age 67, right hemisphere 434.8
2516 Male, age 75, right hemisphere 277.9
1883 Male, age 76, both hemispheres 268.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

346.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 346.1
Samples: 181

Max nTPM: 952.5
Min nTPM: 12.4
Std nTPM: 198.2
Median nTPM: 311.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 952.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 854.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 824.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 795.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 775.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 768.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 750.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 749.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 748.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 723.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 715.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 708.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 696.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 690.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 673.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 670.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 665.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 652.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 633.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 630.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 625.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 624.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 603.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 579.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 575.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 574.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 568.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 567.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 559.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 552.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 543.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 532.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 530.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 529.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 526.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 521.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 509.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 500.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 486.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 485.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 479.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 473.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 473.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 471.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 469.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 469.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 458.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 455.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 451.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 450.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 448.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 445.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 437.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 435.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 434.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 429.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 427.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 425.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 425.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 422.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 413.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 413.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 410.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 408.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 399.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 398.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 385.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 384.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 384.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 384.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 383.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 377.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 375.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 375.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 375.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 371.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 369.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 367.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 366.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 366.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 356.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 355.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 351.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 344.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 341.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 338.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 326.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 318.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 317.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 316.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 311.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 306.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 305.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 304.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 302.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 302.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 301.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 300.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 300.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 297.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 289.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 286.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 286.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 282.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 281.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 268.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 264.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 263.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 263.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 262.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 255.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 253.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 249.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 246.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 245.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 244.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 239.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 239.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 235.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 234.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 226.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 225.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 224.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 223.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 222.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 211.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 206.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 203.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 195.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 194.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 194.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 188.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 185.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 183.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 182.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 182.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 176.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 175.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 175.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 168.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 166.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 165.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 163.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 161.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 158.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 157.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 156.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 155.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 153.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 146.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 145.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 144.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 140.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 138.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 137.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 136.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 133.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 131.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 129.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 126.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 124.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 124.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 121.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 121.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 119.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 107.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 104.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 99.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 98.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 95.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 90.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 78.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 77.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 73.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 71.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 70.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 69.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 62.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 42.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 33.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 12.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

577.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 577.9
FF:10151-102I7 76 years, female 577.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

716.5
Pig sample Sample description nTPM
Amygdala
nTPM: 716.5
Samples: 4

Max nTPM: 940.6
Min nTPM: 477.0
Sample A Female 940.6
Sample B Female 477.0
Sample C Male 782.8
Sample D Male 665.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1280.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 1280.6
Samples: 4

Max nTPM: 1500.3
Min nTPM: 1098.4
Sample A Male 1098.4
Sample B Male 1310.6
Sample C Female 1500.3
Sample D Female 1213.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.5
79360274 Antisense, RP_071018_01_G03, Mouse strain C57BL/6J (56 days, male) 24.5
79490122 Antisense, RP_071018_01_G03, Mouse strain C57BL/6J (56 days, male) 18.5

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