HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:486.6 nTPM
HPA Brain:1345.8 nTPM
GTEx:486.6 nTPM
FANTOM5:872.1 Scaled Tags Per Million
Pig:1175.4 nTPM
Mouse:1434.5 nTPM
Allen mouse:23.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051783Antibody HPA051785Antibody HPA053973Antibody CAB004330
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells HighMediumHighHigh









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 1345.8
Sample id Sample description nTPM
Hippocampus
nTPM: 1306.6
2621 Female, age 67, right hemisphere 1945.6
2148 Female, age 91, left hemisphere 1671.4
1911 Female, age 85, right hemisphere 1174.8
1898 Male, age 80, left hemisphere 1155.2
2529 Female, age 94, left hemisphere 999.8
1855 Male, age 76, left hemisphere 892.6
Dentate gyrus
nTPM: 1327.3
1927 Female, age 91, both hemispheres 2155.1
2531 Female, age 67, both hemispheres 1633.4
2530 Female, age 94, left hemisphere 1325.7
2528 Male, age 74, both hemispheres 1167.2
2010 Male, age 76, both hemispheres 898.6
2246 Female, age 85, both hemispheres 783.7
Entorhinal gyrus
nTPM: 656.8
2613 Female, age 94, left hemisphere 949.9
2764 Male, age 80, right hemisphere 646.3
1938 Female, age 85, left hemisphere 635.8
2686 Male, age 75, right hemisphere 627.6
1787 Male, age 76, left hemisphere 550.1
2117 Female, age 91, right hemisphere 530.9
Hippocampus, CA1
nTPM: 1338.5
2749 Male, age 80, left hemisphere 2224.3
2527 Male, age 74, both hemispheres 1528.0
1873 Female, age 85, both hemispheres 1274.9
2082 Female, age 91, right hemisphere 888.9
2045 Male, age 76, both hemispheres 776.3
Hippocampus, CA2
nTPM: 1149.6
1963 Male, age 80, left hemisphere 2261.3
2113 Female, age 91, right hemisphere 1129.2
2249 Male, age 74, both hemispheres 1067.5
1892 Male, age 76, both hemispheres 1035.7
2437 Female, age 94, left hemisphere 762.8
1940 Female, age 85, left hemisphere 641.2
Hippocampus, CA3
nTPM: 1345.8
2137 Male, age 80, left hemisphere 2110.8
2861 Female, age 67, both hemispheres 1872.3
2620 Female, age 94, left hemisphere 1618.4
2436 Male, age 74, both hemispheres 1073.6
1867 Male, age 76, both hemispheres 709.4
1891 Female, age 85, both hemispheres 690.3
Parahippocampal cortex
nTPM: 809.3
2245 Female, age 91, both hemispheres 1665.7
2693 Female, age 94, both hemispheres 886.1
2622 Female, age 67, right hemisphere 862.3
2250 Female, age 67, right hemisphere 840.8
1850 Male, age 80, both hemispheres 757.9
1933 Female, age 85, both hemispheres 686.6
1990 Female, age 91, right hemisphere 672.8
2018 Male, age 76, both hemispheres 620.3
2532 Female, age 72, left hemisphere 588.5
2692 Male, age 74, both hemispheres 512.4
Perirhinal gyrus
nTPM: 944.7
1847 Female, age 91, left hemisphere 1186.1
2521 Female, age 94, right hemisphere 1052.3
1794 Male, age 80, right hemisphere 963.2
1841 Female, age 85, right hemisphere 955.2
2848 Male, age 76, right hemisphere 567.0
Subiculum
nTPM: 643.6
2729 Female, age 91, right hemisphere 936.4
1901 Male, age 80, both hemispheres 842.2
2042 Male, age 76, both hemispheres 627.2
2619 Male, age 74, both hemispheres 518.2
1977 Female, age 85, both hemispheres 500.1
2438 Female, age 94, left hemisphere 437.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 486.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 486.6
Samples: 255

Max nTPM: 1908.8
Min nTPM: 3.7
Std nTPM: 322.9
Median nTPM: 443.2
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 1908.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1394.4
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 1293.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1267.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1217.6
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 1215.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1197.3
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 1131.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 1123.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 1118.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1100.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 872.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 872.1
FF:10169-103B7 60 years, female 1285.7
FF:10153-102I9 76 years, female 458.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 1175.4
Pig sample Sample description nTPM
Subiculum
nTPM: 607.5
Samples: 4

Max nTPM: 812.2
Min nTPM: 516.0
Sample A Female 812.2
Sample B Female 541.9
Sample C Male 560.0
Sample D Male 516.0
Dorsal hippocampus
nTPM: 978.9
Samples: 4

Max nTPM: 1229.3
Min nTPM: 635.6
Sample A Female 1229.3
Sample B Female 1109.3
Sample C Male 635.6
Sample D Male 941.4
Entorhinal cortex
nTPM: 1175.4
Samples: 4

Max nTPM: 1336.2
Min nTPM: 1001.0
Sample A Female 1336.2
Sample B Female 1151.9
Sample C Male 1212.6
Sample D Male 1001.0
Ventral hippocampus
nTPM: 816.4
Samples: 4

Max nTPM: 1447.7
Min nTPM: 511.2
Sample A Female 511.2
Sample B Female 580.6
Sample C Male 726.1
Sample D Male 1447.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 1434.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1127.9
Samples: 4

Max nTPM: 1221.8
Min nTPM: 1058.3
Sample A Male 1221.8
Sample B Male 1084.4
Sample C Female 1147.1
Sample D Female 1058.3
Hippocampal formation
nTPM: 1434.5
Samples: 4

Max nTPM: 1505.3
Min nTPM: 1295.9
Sample A Male 1505.2
Sample B Male 1431.5
Sample C Female 1505.3
Sample D Female 1295.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 23.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.3
79360274 Antisense, RP_071018_01_G03, Mouse strain C57BL/6J (56 days, male) 23.3
79490122 Antisense, RP_071018_01_G03, Mouse strain C57BL/6J (56 days, male) 18.0

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