MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:188.5 nTPM
HPA Brain:384.0 nTPM
GTEx:188.5 nTPM
FANTOM5:308.7 Scaled Tags Per Million
Pig:179.6 nTPM
Mouse:68.2 nTPM
Allen mouse:7.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 384.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 320.6
2666 Male, age 74, left hemisphere 415.8
1833 Male, age 53, unknown 375.1
1830 Male, age 51, unknown 370.9
2586 Male, age 75, left hemisphere 369.4
1870 Female, age 42, unknown 313.4
2411 Female, age 72, unknown 305.2
2828 Female, age 72, unknown 298.5
2019 Male, age 18, unknown 281.7
2219 Male, age 76, both hemispheres 241.9
1827 Male, age 72, unknown 234.4
Dorsal raphe nucleus
nTPM: 218.7
2750 Male, age 76, both hemispheres 317.7
2016 Female, age 72, unknown 258.4
1828 Male, age 53, unknown 225.2
2047 Male, age 72, unknown 166.7
2298 Female, age 72, unknown 125.5
Inferior colliculus
nTPM: 216.1
2849 Male, age 72, unknown 257.4
1848 Female, age 42, unknown 236.0
1890 Male, age 53, unknown 218.6
2097 Female, age 72, unknown 152.4
Median raphe nucleus
nTPM: 216.6
2220 Male, age 76, midline 216.6
Periaquaductal grey, anterior
nTPM: 213.0
2502 Female, age 75, unknown 235.1
1947 Male, age 18, unknown 220.9
1795 Male, age 51, unknown 183.0
Periaquaductal grey, dorsal
nTPM: 184.9
2464 Female, age 72, unknown 234.0
1831 Male, age 72, unknown 196.2
2850 Male, age 76, both hemispheres 170.3
1840 Male, age 53, unknown 139.2
Periaquaductal grey, lateral
nTPM: 187.9
2053 Male, age 18, unknown 209.9
2140 Male, age 76, both hemispheres 177.0
2272 Male, age 74, both hemispheres 176.8
Pretectal area
nTPM: 206.0
1815 Male, age 53, unknown 289.0
2407 Male, age 75, both hemispheres 280.7
2316 Male, age 76, right hemisphere 274.3
1817 Female, age 42, unknown 233.0
2825 Male, age 18, unknown 232.3
2007 Male, age 72, unknown 201.3
2224 Female, age 72, unknown 166.5
2273 Male, age 74, both hemispheres 150.5
1944 Female, age 72, unknown 148.5
1816 Male, age 51, unknown 145.5
2667 Female, age 75, unknown 144.2
Red nucleus
nTPM: 384.0
2503 Female, age 72, unknown 466.8
1865 Male, age 51, unknown 458.0
1904 Male, age 53, unknown 408.1
2588 Male, age 74, left hemisphere 396.4
2227 Male, age 72, unknown 395.3
2769 Male, age 72, unknown 390.6
2823 Male, age 76, right hemisphere 387.6
1821 Female, age 72, unknown 358.1
2725 Female, age 75, unknown 356.0
2785 Male, age 18, unknown 355.4
1954 Female, age 42, unknown 350.9
2584 Male, age 75, left hemisphere 284.9
Substantia nigra
nTPM: 231.8
2699 Male, age 18, unknown 295.0
2409 Female, age 72, unknown 256.7
2665 Male, age 74, both hemispheres 253.4
2590 Female, age 75, unknown 250.2
1851 Male, age 51, unknown 245.5
2583 Male, age 75, right hemisphere 232.2
1889 Female, age 72, unknown 228.2
1941 Male, age 53, unknown 198.0
2241 Male, age 72, unknown 186.2
1916 Female, age 42, unknown 172.1
Superior colliculus
nTPM: 277.4
1995 Male, age 72, unknown 390.8
1913 Female, age 42, unknown 383.5
2668 Female, age 75, unknown 325.4
2587 Male, age 74, left hemisphere 297.7
1839 Male, age 51, unknown 285.1
1895 Male, age 76, right hemisphere 275.2
2664 Male, age 75, both hemispheres 250.6
1796 Male, age 53, unknown 212.9
2261 Male, age 18, unknown 182.6
2087 Female, age 72, unknown 170.7
Ventral tegmental area
nTPM: 240.0
2223 Female, age 72, unknown 308.3
2410 Female, age 72, unknown 251.2
1942 Male, age 51, unknown 232.7
2218 Male, age 76, both hemispheres 221.0
2021 Male, age 53, unknown 217.8
1915 Female, age 42, unknown 208.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 188.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 188.5
Samples: 183

Max nTPM: 628.6
Min nTPM: 33.5
Std nTPM: 99.5
Median nTPM: 166.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 628.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 501.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 441.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 441.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 434.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 424.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 403.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 397.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 393.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 370.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 366.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 308.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 308.7
FF:10158-103A5 76 years, female 308.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 179.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 179.7
Samples: 4

Max nTPM: 263.4
Min nTPM: 148.2
Sample A Female 151.4
Sample B Female 148.2
Sample C Male 155.6
Sample D Male 263.4
Midbrain
nTPM: 165.1
Samples: 4

Max nTPM: 251.8
Min nTPM: 106.3
Sample A Female 251.8
Sample B Female 188.9
Sample C Male 106.3
Sample D Male 113.4
Periaqueductal gray
nTPM: 130.5
Samples: 3

Max nTPM: 151.1
Min nTPM: 113.7
Sample B Female 151.1
Sample C Male 113.7
Sample D Male 126.7
Superior colliculi
nTPM: 123.4
Samples: 4

Max nTPM: 159.5
Min nTPM: 78.5
Sample A Female 126.0
Sample B Female 78.5
Sample C Male 129.7
Sample D Male 159.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 68.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.2
Samples: 4

Max nTPM: 69.5
Min nTPM: 67.0
Sample A Male 67.1
Sample B Male 67.0
Sample C Female 69.5
Sample D Female 69.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
69752041 Antisense, RP_050505_01_A02, Mouse strain C57BL/6J (56 days, male) 7.8

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