On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
230.3
nTPM
HPA Brain:
321.3
nTPM
GTEx:
230.3
nTPM
FANTOM5:
371.8
Scaled Tags Per Million
Macaque:
146.2
nTPM
Mouse:
106.3
nTPM
Rat:
82.9
nTPM
Pig:
204.8
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
7456
Sample
Intensity
Spinal cord_01
6074
Spinal cord_02
3849
Spinal cord_03
12770
Spinal cord_04
8400
Spinal cord_05
9483
Spinal cord_06
7317
Spinal cord_07
7595
Spinal cord_08
6749
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
321.3
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 278.7
2734
Male, age 80, both hemispheres
378.6
2818
Female, age 79, both hemispheres
282.0
2819
Male, age 47, both hemispheres
245.6
2193
Male, age 75, both hemispheres
208.5
Cervical spinal cord, central gray nTPM: 234.4
2194
Female, age 79, both hemispheres
253.6
2565
Male, age 75, midline
241.4
2048
Male, age 55, midline
233.2
2816
Male, age 47, midline
232.0
1981
Female, age 72, midline
211.9
Cervical spinal cord, dorsal horn nTPM: 223.3
2173
Female, age 72, unknown
281.0
2296
Male, age 66, both hemispheres
260.1
1877
Male, age 55, unknown
237.9
2069
Male, age 47, both hemispheres
216.9
2721
Male, age 90, both hemispheres
176.4
2297
Male, age 75, both hemispheres
167.6
Cervical spinal cord, ventral horn nTPM: 321.3
2480
Male, age 75, both hemispheres
382.5
2809
Male, age 90, both hemispheres
372.1
2295
Male, age 66, both hemispheres
342.0
2068
Male, age 55, unknown
311.7
2820
Female, age 79, both hemispheres
305.6
2098
Female, age 72, unknown
213.6
Dorsal funiculus (white matter) nTPM: 253.3
2064
Female, age 79, both hemispheres
285.9
2817
Male, age 47, both hemispheres
283.5
2810
Male, age 90, both hemispheres
271.6
2812
Male, age 66, both hemispheres
221.6
2128
Male, age 75, both hemispheres
203.9
Lateral funiculus (white matter) nTPM: 234.1
2094
Female, age 79, both hemispheres
314.4
2099
Male, age 90, both hemispheres
223.9
2294
Male, age 66, both hemispheres
202.6
2192
Male, age 75, both hemispheres
195.4
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
230.3
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 230.3
Samples: 204
Max nTPM: 664.7
Min nTPM: 76.1
Std nTPM: 91.5
Median nTPM: 210.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
664.7
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
586.5
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
539.2
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
509.8
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
508.7
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
467.7
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
444.2
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
412.7
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
410.5
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
398.7
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
391.0
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
390.2
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
379.5
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
373.4
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
372.4
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
371.2
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
365.3
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
363.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
363.2
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
361.8
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
348.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
341.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
339.7
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
331.1
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
329.9
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
329.7
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
324.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
322.1
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
319.1
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
314.1
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
313.4
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
312.8
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
306.2
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
305.2
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
295.9
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
293.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
287.2
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
286.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
284.5
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
284.0
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
283.4
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
282.2
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
280.6
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
279.8
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
274.8
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
273.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
272.9
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
271.7
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
270.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
270.0
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
269.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
269.0
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
267.3
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
266.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
266.2
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
265.1
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
264.6
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
263.3
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
262.2
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
261.9
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
260.7
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
260.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
259.6
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
259.5
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
257.0
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
253.7
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
253.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
253.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
252.2
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
251.8
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
251.6
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
248.8
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
247.8
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
247.4
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
247.2
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
246.3
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
244.9
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
244.4
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
244.0
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
242.0
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
239.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
239.3
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
228.1
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
225.3
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
224.4
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
223.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
221.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
220.6
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
220.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
220.0
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
218.7
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
218.6
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
218.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
217.2
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
216.1
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
215.3
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
213.8
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
213.7
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
211.6
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
211.3
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
211.0
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
210.8
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
209.1
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
209.0
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
208.3
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
207.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
206.4
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
206.2
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
205.9
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
205.7
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
205.1
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
203.9
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
200.3
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
199.6
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
199.2
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
199.2
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
198.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
197.6
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
197.2
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
197.0
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
196.8
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
195.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
194.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
193.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
192.5
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
190.2
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
188.6
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
188.3
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
187.7
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
187.5
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
186.7
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
186.6
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
186.3
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
183.2
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
182.6
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
181.9
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
180.7
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
178.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
177.5
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
175.9
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
175.5
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
175.0
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
174.1
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
173.7
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
173.2
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
172.6
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
172.4
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
171.9
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
171.2
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
170.4
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
170.2
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
170.1
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
170.1
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
168.8
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
168.5
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
167.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
167.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
166.5
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
165.8
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
165.7
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
165.3
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
164.0
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
163.9
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
163.7
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
162.4
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
162.3
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
160.9
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
160.8
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
160.5
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
160.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
157.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
156.5
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
154.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
151.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
150.5
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
149.6
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
149.4
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
149.4
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
148.2
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
147.6
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
146.3
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
145.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
143.1
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
142.8
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
139.3
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
137.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
137.4
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
132.2
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
124.1
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
123.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
121.8
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
119.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
112.4
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
111.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
111.9
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
106.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
102.6
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
100.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
99.4
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
97.3
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
94.8
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
94.1
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
90.5
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
76.1
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
146.2
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 126.6
Samples: 2
Max nTPM: 147.7
Min nTPM: 105.6
Sample A
105.6
Sample B
147.7
Ventral spinal cord nTPM: 146.2
Samples: 1
Max nTPM: 146.2
Min nTPM: 146.2
Sample A
146.2
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
204.8
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 179.0
Samples: 4
Max nTPM: 195.7
Min nTPM: 160.0
Sample A
Female
160.0
Sample B
Female
195.7
Sample C
Male
165.7
Sample D
Male
194.5
Ventral spinal cord nTPM: 204.9
Samples: 4
Max nTPM: 239.7
Min nTPM: 184.8
Sample A
Female
190.8
Sample B
Female
204.1
Sample C
Male
184.8
Sample D
Male
239.7
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
106.3
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 106.3
Samples: 4
Max nTPM: 121.7
Min nTPM: 95.3
Sample A
95.3
Sample B
121.7
Sample C
108.4
Sample D
99.6
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.9
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 82.9
Samples: 4
Max nTPM: 90.6
Min nTPM: 71.3
Sample A
89.3
Sample A
90.6
Sample A
80.4
Sample A
71.3
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The Human Protein Atlas project is funded
