A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8506.8
nTPM
Monaco:
1350.0
nTPM
Schmiedel:
355.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8506.8
HPA sample
nTPM
Memory B-cell nTPM: 8506.8
Samples: 6
Max nTPM: 9825.3
Min nTPM: 6972.0
P10809_1017
7125.1
P10809_1025
9825.3
P10809_1044
6972.0
P10809_1063
9332.0
P10809_1092
8247.9
P10809_1105
9538.3
Naive B-cell nTPM: 7073.6
Samples: 6
Max nTPM: 8660.0
Min nTPM: 5641.5
P10809_1011
5763.2
P10809_1029
7370.5
P10809_1048
5641.5
P10809_1067
8219.1
P10809_1091
6787.5
P10809_1104
8660.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1350.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1350.0
Samples: 4
Max nTPM: 2649.6
Min nTPM: 354.9
RHH5310_R3677
989.9
RHH5218_R3590
354.9
RHH5247_R3619
2649.6
RHH5276_R3648
1405.5
Naive B-cell nTPM: 1165.2
Samples: 4
Max nTPM: 2204.5
Min nTPM: 453.2
RHH5308_R3675
1090.2
RHH5216_R3588
453.2
RHH5245_R3617
2204.5
RHH5274_R3646
913.0
Non-switched memory B-cell nTPM: 921.0
Samples: 4
Max nTPM: 1497.5
Min nTPM: 485.9
RHH5309_R3676
1160.1
RHH5217_R3589
485.9
RHH5246_R3618
540.6
RHH5275_R3647
1497.5
Plasmablast nTPM: 716.0
Samples: 4
Max nTPM: 878.5
Min nTPM: 364.5
RHH5312_R3679
866.9
RHH5220_R3592
364.5
RHH5249_R3621
754.1
RHH5278_R3650
878.5
Switched memory B-cell nTPM: 863.9
Samples: 4
Max nTPM: 1217.1
Min nTPM: 540.9
RHH5311_R3678
1026.5
RHH5219_R3591
671.3
RHH5248_R3620
540.9
RHH5277_R3649
1217.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
355.5
Schmiedel sample id
TPM
Naive B-cell TPM: 355.5
Samples: 91
Max TPM: 465.9
Min TPM: 134.7
B_CELL_NAIVE_1
465.9
B_CELL_NAIVE_2
440.0
B_CELL_NAIVE_3
431.5
B_CELL_NAIVE_4
427.8
B_CELL_NAIVE_5
426.3
B_CELL_NAIVE_6
420.3
B_CELL_NAIVE_7
409.4
B_CELL_NAIVE_8
408.8
B_CELL_NAIVE_9
408.4
B_CELL_NAIVE_10
404.8
B_CELL_NAIVE_11
404.6
B_CELL_NAIVE_12
402.6
B_CELL_NAIVE_13
399.9
B_CELL_NAIVE_14
399.7
B_CELL_NAIVE_15
398.8
B_CELL_NAIVE_16
398.0
B_CELL_NAIVE_17
398.0
B_CELL_NAIVE_18
397.4
B_CELL_NAIVE_19
396.7
B_CELL_NAIVE_20
394.3
B_CELL_NAIVE_21
392.0
B_CELL_NAIVE_22
389.6
B_CELL_NAIVE_23
388.0
B_CELL_NAIVE_24
386.3
B_CELL_NAIVE_25
385.0
B_CELL_NAIVE_26
381.5
B_CELL_NAIVE_27
380.5
B_CELL_NAIVE_28
380.5
B_CELL_NAIVE_29
379.7
B_CELL_NAIVE_30
377.5
B_CELL_NAIVE_31
377.5
B_CELL_NAIVE_32
377.3
B_CELL_NAIVE_33
376.8
B_CELL_NAIVE_34
373.9
B_CELL_NAIVE_35
371.4
B_CELL_NAIVE_36
371.3
B_CELL_NAIVE_37
370.0
B_CELL_NAIVE_38
369.2
B_CELL_NAIVE_39
369.1
B_CELL_NAIVE_40
366.0
B_CELL_NAIVE_41
363.5
B_CELL_NAIVE_42
361.8
B_CELL_NAIVE_43
360.9
B_CELL_NAIVE_44
358.8
B_CELL_NAIVE_45
355.8
B_CELL_NAIVE_46
355.7
B_CELL_NAIVE_47
355.4
B_CELL_NAIVE_48
355.0
B_CELL_NAIVE_49
354.3
B_CELL_NAIVE_50
352.7
B_CELL_NAIVE_51
351.6
B_CELL_NAIVE_52
351.5
B_CELL_NAIVE_53
350.8
B_CELL_NAIVE_54
350.7
B_CELL_NAIVE_55
349.1
B_CELL_NAIVE_56
347.8
B_CELL_NAIVE_57
346.9
B_CELL_NAIVE_58
345.3
B_CELL_NAIVE_59
345.2
B_CELL_NAIVE_60
344.5
B_CELL_NAIVE_61
341.4
B_CELL_NAIVE_62
338.1
B_CELL_NAIVE_63
337.0
B_CELL_NAIVE_64
337.0
B_CELL_NAIVE_65
333.9
B_CELL_NAIVE_66
332.7
B_CELL_NAIVE_67
331.8
B_CELL_NAIVE_68
331.7
B_CELL_NAIVE_69
331.1
B_CELL_NAIVE_70
329.7
B_CELL_NAIVE_71
327.5
B_CELL_NAIVE_72
327.4
B_CELL_NAIVE_73
324.5
B_CELL_NAIVE_74
320.7
B_CELL_NAIVE_75
314.5
B_CELL_NAIVE_76
314.2
B_CELL_NAIVE_77
312.5
B_CELL_NAIVE_78
312.3
B_CELL_NAIVE_79
312.1
B_CELL_NAIVE_80
310.6
B_CELL_NAIVE_81
307.5
B_CELL_NAIVE_82
302.9
B_CELL_NAIVE_83
298.8
B_CELL_NAIVE_84
298.3
B_CELL_NAIVE_85
297.8
B_CELL_NAIVE_86
283.3
B_CELL_NAIVE_87
276.7
B_CELL_NAIVE_88
265.2
B_CELL_NAIVE_89
264.9
B_CELL_NAIVE_90
244.6
B_CELL_NAIVE_91
134.7
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