A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1928.3
nTPM
Monaco:
164.3
nTPM
GRANULOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1928.3
HPA sample
nTPM
Basophil nTPM: 1928.3
Samples: 4
Max nTPM: 2172.2
Min nTPM: 1611.5
P10809_1038
1611.5
P10809_1057
2172.2
P10809_1084
2120.3
P10809_1102
1809.0
Eosinophil nTPM: 864.8
Samples: 6
Max nTPM: 1064.7
Min nTPM: 678.9
P10809_1002
678.9
P10809_1021
1013.2
P10809_1040
879.9
P10809_1059
830.4
P10809_1078
721.9
P10809_1101
1064.7
Neutrophil nTPM: 573.0
Samples: 6
Max nTPM: 841.9
Min nTPM: 424.6
P10809_1019
456.5
P10809_1032
424.6
P10809_1051
841.9
P10809_1070
450.3
P10809_1079
505.8
P10809_1096
759.1
GRANULOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
164.3
Monaco sample
nTPM
Basophil nTPM: 164.3
Samples: 4
Max nTPM: 272.1
Min nTPM: 98.5
RHH5320_R3687
181.6
RHH5228_R3600
272.1
RHH5257_R3629
105.1
RHH5286_R3658
98.5
Neutrophil nTPM: 106.3
Samples: 4
Max nTPM: 184.1
Min nTPM: 54.0
RHH5319_R3686
54.0
RHH5227_R3599
184.1
RHH5256_R3628
111.8
RHH5285_R3657
75.4
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