A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5361.8
nTPM
Monaco:
495.3
nTPM
Schmiedel:
277.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5361.8
HPA sample
nTPM
NK-cell nTPM: 5361.8
Samples: 6
Max nTPM: 6847.7
Min nTPM: 1872.7
P10809_1013
5114.5
P10809_1033
6847.7
P10809_1052
5883.7
P10809_1071
6142.2
P10809_1093
1872.7
P10809_1103
6310.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
495.3
Monaco sample
nTPM
NK-cell nTPM: 495.3
Samples: 4
Max nTPM: 534.9
Min nTPM: 444.1
RHH5316_R3683
526.8
RHH5224_R3596
444.1
RHH5253_R3625
534.9
RHH5282_R3654
475.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
277.8
Schmiedel sample id
TPM
NK-cell TPM: 277.8
Samples: 90
Max TPM: 406.6
Min TPM: 176.7
NK_1
406.6
NK_2
394.0
NK_3
361.6
NK_4
361.4
NK_5
355.4
NK_6
352.1
NK_7
346.2
NK_8
346.2
NK_9
334.5
NK_10
333.4
NK_11
330.0
NK_12
325.8
NK_13
322.0
NK_14
320.4
NK_15
318.9
NK_16
316.8
NK_17
315.4
NK_18
311.5
NK_19
307.1
NK_20
304.1
NK_21
301.7
NK_22
298.8
NK_23
297.9
NK_24
294.9
NK_25
294.3
NK_26
293.8
NK_27
293.4
NK_28
291.4
NK_29
290.8
NK_30
290.6
NK_31
289.7
NK_32
287.6
NK_33
287.1
NK_34
287.0
NK_35
284.7
NK_36
284.4
NK_37
283.9
NK_38
283.8
NK_39
283.6
NK_40
283.2
NK_41
283.1
NK_42
281.3
NK_43
280.6
NK_44
279.9
NK_45
279.8
NK_46
278.1
NK_47
275.3
NK_48
274.4
NK_49
273.7
NK_50
272.3
NK_51
272.1
NK_52
270.9
NK_53
268.5
NK_54
267.4
NK_55
264.8
NK_56
264.4
NK_57
264.2
NK_58
260.8
NK_59
259.0
NK_60
257.3
NK_61
257.1
NK_62
253.0
NK_63
252.5
NK_64
252.3
NK_65
252.2
NK_66
251.2
NK_67
250.0
NK_68
249.3
NK_69
245.9
NK_70
244.6
NK_71
244.4
NK_72
242.1
NK_73
239.3
NK_74
239.2
NK_75
237.7
NK_76
234.6
NK_77
233.6
NK_78
233.4
NK_79
232.3
NK_80
230.5
NK_81
227.0
NK_82
226.6
NK_83
225.2
NK_84
220.3
NK_85
219.9
NK_86
218.2
NK_87
217.2
NK_88
205.1
NK_89
193.4
NK_90
176.7
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