A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.9
nTPM
Monaco:
127.3
nTPM
Schmiedel:
77.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.9
HPA sample
nTPM
Memory B-cell nTPM: 2.9
Samples: 6
Max nTPM: 8.3
Min nTPM: 0.0
P10809_1017
8.3
P10809_1025
2.4
P10809_1044
0.0
P10809_1063
1.3
P10809_1092
4.0
P10809_1105
1.5
Naive B-cell nTPM: 0.7
Samples: 6
Max nTPM: 1.3
Min nTPM: 0.3
P10809_1011
0.8
P10809_1029
0.3
P10809_1048
1.3
P10809_1067
0.9
P10809_1091
0.6
P10809_1104
0.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 39.8
Samples: 4
Max nTPM: 61.9
Min nTPM: 10.8
RHH5310_R3677
48.9
RHH5218_R3590
10.8
RHH5247_R3619
61.9
RHH5276_R3648
37.4
Naive B-cell nTPM: 9.5
Samples: 4
Max nTPM: 17.8
Min nTPM: 5.3
RHH5308_R3675
5.3
RHH5216_R3588
8.8
RHH5245_R3617
17.8
RHH5274_R3646
6.1
Non-switched memory B-cell nTPM: 15.2
Samples: 4
Max nTPM: 32.4
Min nTPM: 8.3
RHH5309_R3676
11.2
RHH5217_R3589
8.8
RHH5246_R3618
32.4
RHH5275_R3647
8.3
Plasmablast nTPM: 127.3
Samples: 4
Max nTPM: 148.3
Min nTPM: 104.6
RHH5312_R3679
104.6
RHH5220_R3592
119.6
RHH5249_R3621
136.6
RHH5278_R3650
148.3
Switched memory B-cell nTPM: 36.7
Samples: 4
Max nTPM: 47.7
Min nTPM: 28.9
RHH5311_R3678
28.9
RHH5219_R3591
35.0
RHH5248_R3620
47.7
RHH5277_R3649
35.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.9
Schmiedel sample id
TPM
Naive B-cell TPM: 77.9
Samples: 91
Max TPM: 145.1
Min TPM: 39.1
B_CELL_NAIVE_1
145.1
B_CELL_NAIVE_2
136.8
B_CELL_NAIVE_3
132.9
B_CELL_NAIVE_4
123.4
B_CELL_NAIVE_5
107.7
B_CELL_NAIVE_6
107.5
B_CELL_NAIVE_7
104.0
B_CELL_NAIVE_8
102.9
B_CELL_NAIVE_9
101.0
B_CELL_NAIVE_10
99.6
B_CELL_NAIVE_11
96.8
B_CELL_NAIVE_12
95.6
B_CELL_NAIVE_13
94.8
B_CELL_NAIVE_14
89.0
B_CELL_NAIVE_15
88.4
B_CELL_NAIVE_16
87.6
B_CELL_NAIVE_17
87.5
B_CELL_NAIVE_18
87.4
B_CELL_NAIVE_19
86.9
B_CELL_NAIVE_20
86.3
B_CELL_NAIVE_21
86.1
B_CELL_NAIVE_22
85.3
B_CELL_NAIVE_23
85.3
B_CELL_NAIVE_24
85.1
B_CELL_NAIVE_25
84.5
B_CELL_NAIVE_26
83.5
B_CELL_NAIVE_27
82.8
B_CELL_NAIVE_28
81.9
B_CELL_NAIVE_29
81.2
B_CELL_NAIVE_30
80.9
B_CELL_NAIVE_31
80.7
B_CELL_NAIVE_32
79.7
B_CELL_NAIVE_33
79.0
B_CELL_NAIVE_34
79.0
B_CELL_NAIVE_35
78.9
B_CELL_NAIVE_36
78.9
B_CELL_NAIVE_37
78.3
B_CELL_NAIVE_38
78.0
B_CELL_NAIVE_39
77.9
B_CELL_NAIVE_40
77.9
B_CELL_NAIVE_41
77.8
B_CELL_NAIVE_42
76.4
B_CELL_NAIVE_43
76.1
B_CELL_NAIVE_44
75.6
B_CELL_NAIVE_45
75.4
B_CELL_NAIVE_46
74.7
B_CELL_NAIVE_47
74.5
B_CELL_NAIVE_48
74.1
B_CELL_NAIVE_49
73.4
B_CELL_NAIVE_50
73.3
B_CELL_NAIVE_51
73.1
B_CELL_NAIVE_52
72.9
B_CELL_NAIVE_53
72.9
B_CELL_NAIVE_54
72.8
B_CELL_NAIVE_55
72.6
B_CELL_NAIVE_56
72.3
B_CELL_NAIVE_57
71.5
B_CELL_NAIVE_58
71.4
B_CELL_NAIVE_59
71.1
B_CELL_NAIVE_60
70.8
B_CELL_NAIVE_61
70.5
B_CELL_NAIVE_62
70.1
B_CELL_NAIVE_63
69.9
B_CELL_NAIVE_64
69.6
B_CELL_NAIVE_65
68.5
B_CELL_NAIVE_66
68.4
B_CELL_NAIVE_67
67.0
B_CELL_NAIVE_68
66.9
B_CELL_NAIVE_69
66.4
B_CELL_NAIVE_70
66.3
B_CELL_NAIVE_71
66.2
B_CELL_NAIVE_72
66.0
B_CELL_NAIVE_73
65.9
B_CELL_NAIVE_74
65.5
B_CELL_NAIVE_75
64.2
B_CELL_NAIVE_76
64.0
B_CELL_NAIVE_77
63.0
B_CELL_NAIVE_78
61.5
B_CELL_NAIVE_79
61.4
B_CELL_NAIVE_80
61.2
B_CELL_NAIVE_81
59.2
B_CELL_NAIVE_82
58.5
B_CELL_NAIVE_83
57.7
B_CELL_NAIVE_84
57.7
B_CELL_NAIVE_85
57.5
B_CELL_NAIVE_86
57.5
B_CELL_NAIVE_87
56.6
B_CELL_NAIVE_88
56.4
B_CELL_NAIVE_89
54.2
B_CELL_NAIVE_90
49.9
B_CELL_NAIVE_91
39.1
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