A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.2
nTPM
Monaco:
35.5
nTPM
Schmiedel:
131.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.2
HPA sample
nTPM
Classical monocyte nTPM: 0.4
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.1
P10809_1003
1.0
P10809_1020
0.1
P10809_1039
0.6
P10809_1058
0.3
P10809_1080
0.3
P10809_1107
0.4
Intermediate monocyte nTPM: 5.9
Samples: 6
Max nTPM: 14.6
Min nTPM: 2.5
P10809_1004
7.2
P10809_1023
3.1
P10809_1042
4.8
P10809_1061
14.6
P10809_1081
2.5
P10809_1108
3.0
Non-classical monocyte nTPM: 9.2
Samples: 5
Max nTPM: 25.0
Min nTPM: 2.0
P10809_1005
9.8
P10809_1053
6.7
P10809_1072
25.0
P10809_1082
2.0
P10809_1109
2.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.5
Monaco sample
nTPM
Classical monocyte nTPM: 12.7
Samples: 4
Max nTPM: 23.8
Min nTPM: 4.3
RHH5313_R3680
4.3
RHH5221_R3593
23.8
RHH5250_R3622
16.3
RHH5279_R3651
6.4
Intermediate monocyte nTPM: 29.5
Samples: 4
Max nTPM: 67.2
Min nTPM: 12.5
RHH5314_R3681
12.5
RHH5222_R3594
67.2
RHH5251_R3623
19.2
RHH5280_R3652
18.9
Non-classical monocyte nTPM: 35.5
Samples: 4
Max nTPM: 64.4
Min nTPM: 11.6
RHH5315_R3682
11.6
RHH5223_R3595
64.4
RHH5252_R3624
22.9
RHH5281_R3653
42.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
131.3
Schmiedel sample id
TPM
Classical monocyte TPM: 126.1
Samples: 91
Max TPM: 322.7
Min TPM: 42.0
MONOCYTES_1
322.7
MONOCYTES_2
299.2
MONOCYTES_3
228.6
MONOCYTES_4
219.6
MONOCYTES_5
217.8
MONOCYTES_6
204.2
MONOCYTES_7
195.5
MONOCYTES_8
190.0
MONOCYTES_9
182.6
MONOCYTES_10
179.9
MONOCYTES_11
176.1
MONOCYTES_12
173.6
MONOCYTES_13
168.6
MONOCYTES_14
168.0
MONOCYTES_15
162.6
MONOCYTES_16
161.5
MONOCYTES_17
160.9
MONOCYTES_18
159.6
MONOCYTES_19
159.6
MONOCYTES_20
158.5
MONOCYTES_21
158.1
MONOCYTES_22
156.4
MONOCYTES_23
156.1
MONOCYTES_24
154.4
MONOCYTES_25
154.1
MONOCYTES_26
152.2
MONOCYTES_27
148.5
MONOCYTES_28
145.5
MONOCYTES_29
141.2
MONOCYTES_30
139.8
MONOCYTES_31
138.9
MONOCYTES_32
138.2
MONOCYTES_33
136.2
MONOCYTES_34
134.9
MONOCYTES_35
134.4
MONOCYTES_36
129.1
MONOCYTES_37
125.5
MONOCYTES_38
124.8
MONOCYTES_39
124.7
MONOCYTES_40
123.6
MONOCYTES_41
123.2
MONOCYTES_42
120.8
MONOCYTES_43
119.2
MONOCYTES_44
118.3
MONOCYTES_45
116.0
MONOCYTES_46
116.0
MONOCYTES_47
114.6
MONOCYTES_48
114.5
MONOCYTES_49
114.4
MONOCYTES_50
113.1
MONOCYTES_51
112.9
MONOCYTES_52
110.1
MONOCYTES_53
109.1
MONOCYTES_54
107.1
MONOCYTES_55
106.7
MONOCYTES_56
105.7
MONOCYTES_57
103.8
MONOCYTES_58
100.7
MONOCYTES_59
100.3
MONOCYTES_60
98.9
MONOCYTES_61
98.5
MONOCYTES_62
98.5
MONOCYTES_63
97.7
MONOCYTES_64
97.0
MONOCYTES_65
96.8
MONOCYTES_66
90.2
MONOCYTES_67
89.5
MONOCYTES_68
89.2
MONOCYTES_69
88.6
MONOCYTES_70
88.5
MONOCYTES_71
87.5
MONOCYTES_72
87.0
MONOCYTES_73
86.9
MONOCYTES_74
86.8
MONOCYTES_75
86.0
MONOCYTES_76
82.4
MONOCYTES_77
81.6
MONOCYTES_78
81.3
MONOCYTES_79
81.3
MONOCYTES_80
80.7
MONOCYTES_81
79.8
MONOCYTES_82
79.6
MONOCYTES_83
76.3
MONOCYTES_84
76.3
MONOCYTES_85
75.1
MONOCYTES_86
74.4
MONOCYTES_87
72.5
MONOCYTES_88
68.3
MONOCYTES_89
63.5
MONOCYTES_90
58.4
MONOCYTES_91
42.0
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Non-classical monocyte TPM: 131.3
Samples: 90
Max TPM: 235.7
Min TPM: 64.4
M2_1
235.7
M2_2
224.1
M2_3
219.2
M2_4
203.8
M2_5
202.7
M2_6
202.0
M2_7
199.0
M2_8
192.1
M2_9
186.9
M2_10
184.8
M2_11
180.0
M2_12
176.4
M2_13
175.2
M2_14
172.2
M2_15
171.4
M2_16
168.5
M2_17
168.1
M2_18
167.3
M2_19
165.7
M2_20
164.0
M2_21
160.2
M2_22
159.1
M2_23
156.7
M2_24
156.7
M2_25
152.9
M2_26
143.0
M2_27
141.5
M2_28
141.1
M2_29
139.9
M2_30
139.0
M2_31
137.8
M2_32
137.7
M2_33
136.9
M2_34
136.3
M2_35
136.0
M2_36
135.9
M2_37
135.4
M2_38
133.7
M2_39
133.0
M2_40
132.7
M2_41
132.7
M2_42
132.5
M2_43
132.5
M2_44
130.9
M2_45
130.1
M2_46
129.9
M2_47
128.9
M2_48
126.2
M2_49
125.2
M2_50
123.1
M2_51
122.7
M2_52
120.1
M2_53
119.5
M2_54
118.6
M2_55
118.6
M2_56
117.7
M2_57
116.9
M2_58
114.8
M2_59
113.9
M2_60
113.4
M2_61
111.1
M2_62
108.8
M2_63
105.7
M2_64
102.0
M2_65
101.4
M2_66
99.7
M2_67
99.7
M2_68
99.4
M2_69
99.2
M2_70
98.3
M2_71
97.9
M2_72
97.8
M2_73
96.9
M2_74
96.1
M2_75
95.9
M2_76
92.3
M2_77
90.9
M2_78
90.9
M2_79
90.3
M2_80
89.6
M2_81
88.7
M2_82
86.8
M2_83
85.0
M2_84
83.1
M2_85
82.1
M2_86
78.8
M2_87
71.4
M2_88
70.9
M2_89
70.1
M2_90
64.4
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