A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
7.0
nTPM
Schmiedel:
35.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
NK-cell nTPM: 1.0
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.0
P10809_1013
1.0
P10809_1033
1.9
P10809_1052
2.4
P10809_1071
0.6
P10809_1093
0.2
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.0
Monaco sample
nTPM
NK-cell nTPM: 7.0
Samples: 4
Max nTPM: 13.6
Min nTPM: 4.5
RHH5316_R3683
4.7
RHH5224_R3596
4.5
RHH5253_R3625
5.2
RHH5282_R3654
13.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.8
Schmiedel sample id
TPM
NK-cell TPM: 35.8
Samples: 90
Max TPM: 73.0
Min TPM: 21.7
NK_1
73.0
NK_2
58.7
NK_3
57.7
NK_4
55.2
NK_5
53.7
NK_6
52.1
NK_7
51.8
NK_8
51.1
NK_9
50.5
NK_10
50.3
NK_11
50.1
NK_12
48.5
NK_13
48.0
NK_14
45.5
NK_15
45.2
NK_16
45.2
NK_17
43.9
NK_18
43.2
NK_19
42.0
NK_20
41.7
NK_21
41.5
NK_22
41.3
NK_23
40.9
NK_24
40.4
NK_25
39.0
NK_26
38.6
NK_27
38.1
NK_28
37.6
NK_29
37.4
NK_30
36.9
NK_31
36.7
NK_32
36.5
NK_33
36.4
NK_34
36.1
NK_35
36.1
NK_36
35.8
NK_37
35.8
NK_38
35.7
NK_39
35.1
NK_40
34.6
NK_41
34.3
NK_42
33.9
NK_43
33.7
NK_44
33.5
NK_45
33.4
NK_46
32.9
NK_47
32.8
NK_48
32.6
NK_49
32.6
NK_50
32.3
NK_51
32.2
NK_52
32.2
NK_53
31.8
NK_54
31.7
NK_55
31.6
NK_56
31.5
NK_57
31.1
NK_58
31.0
NK_59
31.0
NK_60
30.7
NK_61
30.5
NK_62
30.4
NK_63
30.4
NK_64
30.3
NK_65
30.3
NK_66
30.0
NK_67
29.9
NK_68
29.8
NK_69
29.7
NK_70
29.6
NK_71
29.1
NK_72
28.9
NK_73
28.5
NK_74
28.4
NK_75
28.3
NK_76
28.2
NK_77
28.2
NK_78
26.8
NK_79
26.7
NK_80
26.4
NK_81
25.8
NK_82
25.6
NK_83
25.2
NK_84
24.8
NK_85
24.8
NK_86
23.5
NK_87
22.6
NK_88
22.6
NK_89
22.3
NK_90
21.7
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