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  • CRMP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:62.9 nTPM
HPA Brain:82.4 nTPM
GTEx:62.9 nTPM
FANTOM5:76.5 Scaled Tags Per Million
Pig:117.6 nTPM
Mouse:136.1 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.4
Sample id Sample description nTPM
Amygdala
nTPM: 69.6
1987 Female, age 91, left hemisphere 90.2
2517 Female, age 94, left hemisphere 82.1
2514 Male, age 75, right hemisphere 74.3
2814 Male, age 76, right hemisphere 61.6
2695 Female, age 67, right hemisphere 39.6
Basal amygdala
nTPM: 81.2
2243 Female, age 91, right hemisphere 106.5
2685 Female, age 94, left hemisphere 95.5
2609 Male, age 75, right hemisphere 81.7
1955 Male, age 76, both hemispheres 78.4
2110 Male, age 80, left hemisphere 77.8
2827 Female, age 67, right hemisphere 47.3
Central amygdala
nTPM: 76.9
2239 Male, age 80, left hemisphere 83.4
2826 Female, age 94, left hemisphere 83.2
2515 Male, age 75, right hemisphere 80.8
1905 Male, age 76, both hemispheres 69.4
2701 Female, age 91, right hemisphere 67.8
Corticomedial amygdala
nTPM: 82.4
2829 Male, age 80, left hemisphere 100.6
2242 Female, age 91, right hemisphere 90.8
2429 Female, age 94, left hemisphere 85.3
2428 Male, age 75, right hemisphere 79.3
2240 Male, age 76, both hemispheres 73.8
2535 Female, age 67, right hemisphere 64.6
Lateral amygdala
nTPM: 70.7
2534 Female, age 94, left hemisphere 93.3
2255 Female, age 91, right hemisphere 78.1
1883 Male, age 76, both hemispheres 73.5
2516 Male, age 75, right hemisphere 73.1
2256 Male, age 80, left hemisphere 69.6
2830 Female, age 67, right hemisphere 36.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

62.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 62.9
Samples: 181

Max nTPM: 131.6
Min nTPM: 21.3
Std nTPM: 21.2
Median nTPM: 60.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 131.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 130.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 125.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 120.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 112.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 111.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 103.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 100.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 99.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 98.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 98.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 97.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 96.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 95.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 95.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 93.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 91.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 90.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 87.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 87.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 86.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 85.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 85.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 85.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 84.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 84.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 84.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 83.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 83.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 82.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 82.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 81.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 80.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 80.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 79.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 79.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 79.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 79.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 78.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 78.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 78.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 78.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 77.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 77.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 77.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 77.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 76.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 75.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 75.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 75.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 75.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 75.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 74.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 74.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 73.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 72.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 72.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 72.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 71.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 71.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 69.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 69.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 69.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 68.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 68.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 68.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 67.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 67.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 66.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 66.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 66.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 66.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 66.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 66.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 65.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 65.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 65.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 65.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 65.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 65.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 65.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 65.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 64.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 64.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 63.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 63.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 63.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 63.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 62.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 61.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 60.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 60.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 60.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 59.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 59.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 58.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 57.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 57.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 57.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 57.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 57.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 57.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 56.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 56.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 56.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 56.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 56.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 55.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 54.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 54.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 54.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 53.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 53.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 53.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 53.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 53.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 52.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 52.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 52.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 52.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 52.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 52.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 51.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 51.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 51.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 50.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 50.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 50.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 49.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 49.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 49.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 49.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 48.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 48.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 47.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 47.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 47.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 47.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 46.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 46.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 45.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 45.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 44.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 44.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 44.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 44.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 44.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 43.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 43.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 42.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 42.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 41.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 39.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 39.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 38.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 37.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 37.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 37.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 37.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 36.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 36.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 35.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 34.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 34.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 33.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 33.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 32.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 32.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 32.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 32.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 31.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 31.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 30.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 30.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 28.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 28.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 28.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 26.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 21.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

76.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 76.5
FF:10151-102I7 76 years, female 76.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.6
Pig sample Sample description nTPM
Amygdala
nTPM: 117.6
Samples: 4

Max nTPM: 187.4
Min nTPM: 62.4
Sample A Female 187.4
Sample B Female 62.4
Sample C Male 101.0
Sample D Male 119.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 136.1
Samples: 4

Max nTPM: 151.2
Min nTPM: 120.5
Sample A Male 151.2
Sample B Male 138.5
Sample C Female 120.5
Sample D Female 134.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.0
73512561 Antisense, RP_050921_01_B04, Mouse strain C57BL/6J (56 days, male) 4.0

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