MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.6 nTPM
HPA Brain:61.7 nTPM
GTEx:23.6 nTPM
FANTOM5:3.6 Scaled Tags Per Million
Pig:103.8 nTPM
Mouse:62.0 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.1
2666 Male, age 74, left hemisphere 60.5
1827 Male, age 72, unknown 60.0
2586 Male, age 75, left hemisphere 56.3
2828 Female, age 72, unknown 52.1
2219 Male, age 76, both hemispheres 48.5
2019 Male, age 18, unknown 44.9
1870 Female, age 42, unknown 39.7
2411 Female, age 72, unknown 39.2
1833 Male, age 53, unknown 30.1
1830 Male, age 51, unknown 30.0
Dorsal raphe nucleus
nTPM: 44.3
2298 Female, age 72, unknown 59.6
2047 Male, age 72, unknown 50.1
2750 Male, age 76, both hemispheres 38.8
1828 Male, age 53, unknown 37.1
2016 Female, age 72, unknown 36.1
Inferior colliculus
nTPM: 44.5
2097 Female, age 72, unknown 56.4
1890 Male, age 53, unknown 41.8
1848 Female, age 42, unknown 40.3
2849 Male, age 72, unknown 39.7
Median raphe nucleus
nTPM: 61.4
2220 Male, age 76, midline 61.4
Periaquaductal grey, anterior
nTPM: 53.4
1795 Male, age 51, unknown 69.0
2502 Female, age 75, unknown 48.5
1947 Male, age 18, unknown 42.6
Periaquaductal grey, dorsal
nTPM: 47.3
1840 Male, age 53, unknown 52.7
1831 Male, age 72, unknown 51.5
2850 Male, age 76, both hemispheres 46.6
2464 Female, age 72, unknown 38.5
Periaquaductal grey, lateral
nTPM: 44.5
2140 Male, age 76, both hemispheres 49.2
2053 Male, age 18, unknown 45.9
2272 Male, age 74, both hemispheres 38.3
Pretectal area
nTPM: 61.7
1816 Male, age 51, unknown 81.5
1944 Female, age 72, unknown 78.0
2007 Male, age 72, unknown 76.9
1815 Male, age 53, unknown 71.8
1817 Female, age 42, unknown 70.5
2224 Female, age 72, unknown 62.1
2667 Female, age 75, unknown 60.2
2273 Male, age 74, both hemispheres 48.3
2407 Male, age 75, both hemispheres 47.3
2825 Male, age 18, unknown 43.8
2316 Male, age 76, right hemisphere 37.8
Red nucleus
nTPM: 28.0
2785 Male, age 18, unknown 49.7
2584 Male, age 75, left hemisphere 32.3
2503 Female, age 72, unknown 30.2
1954 Female, age 42, unknown 29.5
2588 Male, age 74, left hemisphere 27.7
1821 Female, age 72, unknown 26.8
1865 Male, age 51, unknown 25.6
1904 Male, age 53, unknown 24.7
2227 Male, age 72, unknown 23.8
2769 Male, age 72, unknown 23.6
2823 Male, age 76, right hemisphere 23.3
2725 Female, age 75, unknown 19.3
Substantia nigra
nTPM: 43.6
1889 Female, age 72, unknown 59.7
1916 Female, age 42, unknown 56.0
1941 Male, age 53, unknown 55.5
2665 Male, age 74, both hemispheres 46.3
1851 Male, age 51, unknown 44.4
2583 Male, age 75, right hemisphere 38.4
2241 Male, age 72, unknown 37.3
2409 Female, age 72, unknown 35.4
2590 Female, age 75, unknown 32.1
2699 Male, age 18, unknown 30.4
Superior colliculus
nTPM: 54.8
2668 Female, age 75, unknown 103.2
2261 Male, age 18, unknown 64.7
1796 Male, age 53, unknown 61.7
2087 Female, age 72, unknown 60.3
2664 Male, age 75, both hemispheres 55.9
1913 Female, age 42, unknown 44.0
1839 Male, age 51, unknown 41.8
1995 Male, age 72, unknown 40.1
1895 Male, age 76, right hemisphere 39.8
2587 Male, age 74, left hemisphere 36.9
Ventral tegmental area
nTPM: 48.6
2218 Male, age 76, both hemispheres 57.7
1942 Male, age 51, unknown 50.8
1915 Female, age 42, unknown 47.8
2021 Male, age 53, unknown 47.0
2223 Female, age 72, unknown 44.3
2410 Female, age 72, unknown 44.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.6
Samples: 183

Max nTPM: 90.7
Min nTPM: 3.4
Std nTPM: 14.3
Median nTPM: 20.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 90.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 81.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 71.6
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 71.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 56.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 56.3
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 56.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 56.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 52.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 50.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 47.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 3.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.6
FF:10158-103A5 76 years, female 3.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 103.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.0
Samples: 4

Max nTPM: 144.4
Min nTPM: 13.9
Sample A Female 108.1
Sample B Female 53.5
Sample C Male 144.4
Sample D Male 13.9
Midbrain
nTPM: 103.9
Samples: 4

Max nTPM: 246.8
Min nTPM: 19.7
Sample A Female 19.7
Sample B Female 52.5
Sample C Male 246.8
Sample D Male 96.4
Periaqueductal gray
nTPM: 49.6
Samples: 3

Max nTPM: 72.6
Min nTPM: 36.2
Sample B Female 36.2
Sample C Male 72.6
Sample D Male 39.9
Superior colliculi
nTPM: 86.8
Samples: 4

Max nTPM: 142.9
Min nTPM: 52.0
Sample A Female 62.4
Sample B Female 52.0
Sample C Male 142.9
Sample D Male 89.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.0
Samples: 4

Max nTPM: 64.8
Min nTPM: 60.3
Sample A Male 60.3
Sample B Male 61.3
Sample C Female 64.8
Sample D Female 61.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
73512561 Antisense, RP_050921_01_B04, Mouse strain C57BL/6J (56 days, male) 1.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo