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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
287.0
Sample id
Sample description
nTPM
Amygdala nTPM: 189.8
2814
Male, age 76, right hemisphere
348.5
2517
Female, age 94, left hemisphere
209.8
1987
Female, age 91, left hemisphere
200.4
2514
Male, age 75, right hemisphere
96.0
2695
Female, age 67, right hemisphere
94.6
Basal amygdala nTPM: 287.0
2243
Female, age 91, right hemisphere
417.7
2685
Female, age 94, left hemisphere
378.0
1955
Male, age 76, both hemispheres
302.3
2110
Male, age 80, left hemisphere
284.1
2827
Female, age 67, right hemisphere
201.5
2609
Male, age 75, right hemisphere
138.7
Central amygdala nTPM: 246.2
2826
Female, age 94, left hemisphere
341.8
1905
Male, age 76, both hemispheres
309.6
2239
Male, age 80, left hemisphere
275.8
2701
Female, age 91, right hemisphere
204.6
2515
Male, age 75, right hemisphere
99.1
Corticomedial amygdala nTPM: 274.7
2829
Male, age 80, left hemisphere
331.2
2242
Female, age 91, right hemisphere
329.4
2535
Female, age 67, right hemisphere
320.4
2429
Female, age 94, left hemisphere
308.0
2240
Male, age 76, both hemispheres
264.3
2428
Male, age 75, right hemisphere
95.0
Lateral amygdala nTPM: 215.4
2534
Female, age 94, left hemisphere
399.8
1883
Male, age 76, both hemispheres
319.4
2255
Female, age 91, right hemisphere
202.2
2256
Male, age 80, left hemisphere
192.3
2830
Female, age 67, right hemisphere
100.9
2516
Male, age 75, right hemisphere
77.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
332.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 332.6
Samples: 181
Max nTPM: 890.2
Min nTPM: 49.4
Std nTPM: 162.2
Median nTPM: 317.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
890.2
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
797.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
766.6
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
763.7
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
750.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
729.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
653.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
642.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
633.2
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
616.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
612.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
599.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
575.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
569.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
554.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
553.8
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
551.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
544.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
541.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
537.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
534.6
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
527.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
520.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
519.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
517.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
516.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
496.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
490.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
488.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
485.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
481.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
468.5
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
467.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
460.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
459.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
457.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
456.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
449.2
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
442.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
440.7
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
438.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
435.9
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
435.5
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
435.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
429.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
428.4
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
427.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
424.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
424.4
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
424.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
423.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
423.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
421.2
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
419.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
416.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
404.3
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
404.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
401.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
397.9
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
396.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
390.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
390.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
388.0
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
386.7
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
384.3
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
379.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
374.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
371.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
366.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
364.2
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
364.0
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
363.8
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
361.8
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
361.4
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
360.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
360.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
359.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
349.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
346.4
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
342.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
340.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
337.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
334.7
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
330.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
329.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
328.3
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
326.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
323.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
319.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
319.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
317.2
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
315.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
312.9
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
312.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
311.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
310.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
309.0
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
303.4
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
296.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
293.1
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
291.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
279.0
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
274.7
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
274.6
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
271.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
269.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
267.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
266.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
263.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
261.4
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
260.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
259.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
259.5
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
255.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
255.6
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
255.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
254.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
254.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
254.3
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
252.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
249.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
249.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
243.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
240.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
238.5
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
232.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
231.8
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
229.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
227.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
227.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
225.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
225.3
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
220.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
216.0
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
215.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
214.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
213.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
213.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
212.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
202.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
200.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
200.6
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
199.3
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
195.7
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
193.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
192.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
192.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
185.7
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
178.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
178.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
177.9
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
176.7
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
175.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
174.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
170.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
165.8
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
150.7
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
150.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
137.5
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
136.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
135.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
132.1
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
131.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
129.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
127.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
126.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
124.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
117.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
116.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
104.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
103.0
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
98.3
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
98.1
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
96.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
95.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
84.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
81.2
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
81.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
54.5
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
49.8
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
49.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
186.3
Pig sample
Sample description
nTPM
Amygdala nTPM: 186.3
Samples: 4
Max nTPM: 299.0
Min nTPM: 106.5
Sample A
Female
299.0
Sample B
Female
106.5
Sample C
Male
141.0
Sample D
Male
198.8
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
367.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 367.2
Samples: 4
Max nTPM: 418.0
Min nTPM: 324.2
Sample A
Male
392.4
Sample B
Male
334.0
Sample C
Female
418.0
Sample D
Female
324.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
