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BETA
  • SUMMARY

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  • BRAIN

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  • CAPZB
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:266.9 nTPM
Monaco:315.1 nTPM
Schmiedel:83.9 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

266.9
HPA sample nTPM
Memory B-cell
nTPM: 266.9
Samples: 6

Max nTPM: 303.0
Min nTPM: 234.1
P10809_1017 234.1
P10809_1025 303.0
P10809_1044 296.9
P10809_1063 265.1
P10809_1092 247.0
P10809_1105 255.4
Naive B-cell
nTPM: 204.5
Samples: 6

Max nTPM: 349.9
Min nTPM: 119.1
P10809_1011 119.1
P10809_1029 181.9
P10809_1048 349.9
P10809_1067 165.0
P10809_1091 205.4
P10809_1104 205.8

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

315.1
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 292.9
Samples: 4

Max nTPM: 356.9
Min nTPM: 208.6
RHH5310_R3677 344.2
RHH5218_R3590 262.0
RHH5247_R3619 356.9
RHH5276_R3648 208.6
Naive B-cell
nTPM: 212.4
Samples: 4

Max nTPM: 240.8
Min nTPM: 152.0
RHH5308_R3675 240.8
RHH5216_R3588 220.9
RHH5245_R3617 152.0
RHH5274_R3646 236.0
Non-switched memory B-cell
nTPM: 250.8
Samples: 4

Max nTPM: 341.4
Min nTPM: 190.2
RHH5309_R3676 276.7
RHH5217_R3589 190.2
RHH5246_R3618 341.4
RHH5275_R3647 195.0
Plasmablast
nTPM: 232.1
Samples: 4

Max nTPM: 320.4
Min nTPM: 164.0
RHH5312_R3679 178.2
RHH5220_R3592 320.4
RHH5249_R3621 265.8
RHH5278_R3650 164.0
Switched memory B-cell
nTPM: 315.2
Samples: 4

Max nTPM: 351.8
Min nTPM: 265.1
RHH5311_R3678 295.0
RHH5219_R3591 348.7
RHH5248_R3620 351.8
RHH5277_R3649 265.1

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

83.9
Schmiedel sample id TPM
Naive B-cell
TPM: 83.8
Samples: 91

Max TPM: 122.4
Min TPM: 49.7
B_CELL_NAIVE_1 122.4
B_CELL_NAIVE_2 119.8
B_CELL_NAIVE_3 116.9
B_CELL_NAIVE_4 113.5
B_CELL_NAIVE_5 113.1
B_CELL_NAIVE_6 107.5
B_CELL_NAIVE_7 107.5
B_CELL_NAIVE_8 105.9
B_CELL_NAIVE_9 105.7
B_CELL_NAIVE_10 103.1
B_CELL_NAIVE_11 103.0
B_CELL_NAIVE_12 102.0
B_CELL_NAIVE_13 101.7
B_CELL_NAIVE_14 101.6
B_CELL_NAIVE_15 98.5
B_CELL_NAIVE_16 98.4
B_CELL_NAIVE_17 97.3
B_CELL_NAIVE_18 96.2
B_CELL_NAIVE_19 95.6
B_CELL_NAIVE_20 93.3
B_CELL_NAIVE_21 92.7
B_CELL_NAIVE_22 92.3
B_CELL_NAIVE_23 91.9
B_CELL_NAIVE_24 91.6
B_CELL_NAIVE_25 90.8
B_CELL_NAIVE_26 90.4
B_CELL_NAIVE_27 89.1
B_CELL_NAIVE_28 89.0
B_CELL_NAIVE_29 88.4
B_CELL_NAIVE_30 88.0
B_CELL_NAIVE_31 87.5
B_CELL_NAIVE_32 87.1
B_CELL_NAIVE_33 86.3
B_CELL_NAIVE_34 86.1
B_CELL_NAIVE_35 86.1
B_CELL_NAIVE_36 86.0
B_CELL_NAIVE_37 85.7
B_CELL_NAIVE_38 85.3
B_CELL_NAIVE_39 85.2
B_CELL_NAIVE_40 85.2
B_CELL_NAIVE_41 84.6
B_CELL_NAIVE_42 84.5
B_CELL_NAIVE_43 84.2
B_CELL_NAIVE_44 84.1
B_CELL_NAIVE_45 84.0
B_CELL_NAIVE_46 83.2
B_CELL_NAIVE_47 82.6
B_CELL_NAIVE_48 82.6
B_CELL_NAIVE_49 81.6
B_CELL_NAIVE_50 81.6
B_CELL_NAIVE_51 80.9
B_CELL_NAIVE_52 80.9
B_CELL_NAIVE_53 80.3
B_CELL_NAIVE_54 79.5
B_CELL_NAIVE_55 78.8
B_CELL_NAIVE_56 78.4
B_CELL_NAIVE_57 77.6
B_CELL_NAIVE_58 77.1
B_CELL_NAIVE_59 76.9
B_CELL_NAIVE_60 76.7
B_CELL_NAIVE_61 76.4
B_CELL_NAIVE_62 76.4
B_CELL_NAIVE_63 75.8
B_CELL_NAIVE_64 75.6
B_CELL_NAIVE_65 75.0
B_CELL_NAIVE_66 74.3
B_CELL_NAIVE_67 74.3
B_CELL_NAIVE_68 74.0
B_CELL_NAIVE_69 73.7
B_CELL_NAIVE_70 72.4
B_CELL_NAIVE_71 72.3
B_CELL_NAIVE_72 70.7
B_CELL_NAIVE_73 70.4
B_CELL_NAIVE_74 70.0
B_CELL_NAIVE_75 69.5
B_CELL_NAIVE_76 68.9
B_CELL_NAIVE_77 68.4
B_CELL_NAIVE_78 68.2
B_CELL_NAIVE_79 67.6
B_CELL_NAIVE_80 67.5
B_CELL_NAIVE_81 67.4
B_CELL_NAIVE_82 67.2
B_CELL_NAIVE_83 66.6
B_CELL_NAIVE_84 65.8
B_CELL_NAIVE_85 65.6
B_CELL_NAIVE_86 65.3
B_CELL_NAIVE_87 64.1
B_CELL_NAIVE_88 63.7
B_CELL_NAIVE_89 63.1
B_CELL_NAIVE_90 62.6
B_CELL_NAIVE_91 49.7
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