A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
266.9
nTPM
Monaco:
315.1
nTPM
Schmiedel:
83.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
266.9
HPA sample
nTPM
Memory B-cell nTPM: 266.9
Samples: 6
Max nTPM: 303.0
Min nTPM: 234.1
P10809_1017
234.1
P10809_1025
303.0
P10809_1044
296.9
P10809_1063
265.1
P10809_1092
247.0
P10809_1105
255.4
Naive B-cell nTPM: 204.5
Samples: 6
Max nTPM: 349.9
Min nTPM: 119.1
P10809_1011
119.1
P10809_1029
181.9
P10809_1048
349.9
P10809_1067
165.0
P10809_1091
205.4
P10809_1104
205.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
315.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 292.9
Samples: 4
Max nTPM: 356.9
Min nTPM: 208.6
RHH5310_R3677
344.2
RHH5218_R3590
262.0
RHH5247_R3619
356.9
RHH5276_R3648
208.6
Naive B-cell nTPM: 212.4
Samples: 4
Max nTPM: 240.8
Min nTPM: 152.0
RHH5308_R3675
240.8
RHH5216_R3588
220.9
RHH5245_R3617
152.0
RHH5274_R3646
236.0
Non-switched memory B-cell nTPM: 250.8
Samples: 4
Max nTPM: 341.4
Min nTPM: 190.2
RHH5309_R3676
276.7
RHH5217_R3589
190.2
RHH5246_R3618
341.4
RHH5275_R3647
195.0
Plasmablast nTPM: 232.1
Samples: 4
Max nTPM: 320.4
Min nTPM: 164.0
RHH5312_R3679
178.2
RHH5220_R3592
320.4
RHH5249_R3621
265.8
RHH5278_R3650
164.0
Switched memory B-cell nTPM: 315.2
Samples: 4
Max nTPM: 351.8
Min nTPM: 265.1
RHH5311_R3678
295.0
RHH5219_R3591
348.7
RHH5248_R3620
351.8
RHH5277_R3649
265.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.9
Schmiedel sample id
TPM
Naive B-cell TPM: 83.8
Samples: 91
Max TPM: 122.4
Min TPM: 49.7
B_CELL_NAIVE_1
122.4
B_CELL_NAIVE_2
119.8
B_CELL_NAIVE_3
116.9
B_CELL_NAIVE_4
113.5
B_CELL_NAIVE_5
113.1
B_CELL_NAIVE_6
107.5
B_CELL_NAIVE_7
107.5
B_CELL_NAIVE_8
105.9
B_CELL_NAIVE_9
105.7
B_CELL_NAIVE_10
103.1
B_CELL_NAIVE_11
103.0
B_CELL_NAIVE_12
102.0
B_CELL_NAIVE_13
101.7
B_CELL_NAIVE_14
101.6
B_CELL_NAIVE_15
98.5
B_CELL_NAIVE_16
98.4
B_CELL_NAIVE_17
97.3
B_CELL_NAIVE_18
96.2
B_CELL_NAIVE_19
95.6
B_CELL_NAIVE_20
93.3
B_CELL_NAIVE_21
92.7
B_CELL_NAIVE_22
92.3
B_CELL_NAIVE_23
91.9
B_CELL_NAIVE_24
91.6
B_CELL_NAIVE_25
90.8
B_CELL_NAIVE_26
90.4
B_CELL_NAIVE_27
89.1
B_CELL_NAIVE_28
89.0
B_CELL_NAIVE_29
88.4
B_CELL_NAIVE_30
88.0
B_CELL_NAIVE_31
87.5
B_CELL_NAIVE_32
87.1
B_CELL_NAIVE_33
86.3
B_CELL_NAIVE_34
86.1
B_CELL_NAIVE_35
86.1
B_CELL_NAIVE_36
86.0
B_CELL_NAIVE_37
85.7
B_CELL_NAIVE_38
85.3
B_CELL_NAIVE_39
85.2
B_CELL_NAIVE_40
85.2
B_CELL_NAIVE_41
84.6
B_CELL_NAIVE_42
84.5
B_CELL_NAIVE_43
84.2
B_CELL_NAIVE_44
84.1
B_CELL_NAIVE_45
84.0
B_CELL_NAIVE_46
83.2
B_CELL_NAIVE_47
82.6
B_CELL_NAIVE_48
82.6
B_CELL_NAIVE_49
81.6
B_CELL_NAIVE_50
81.6
B_CELL_NAIVE_51
80.9
B_CELL_NAIVE_52
80.9
B_CELL_NAIVE_53
80.3
B_CELL_NAIVE_54
79.5
B_CELL_NAIVE_55
78.8
B_CELL_NAIVE_56
78.4
B_CELL_NAIVE_57
77.6
B_CELL_NAIVE_58
77.1
B_CELL_NAIVE_59
76.9
B_CELL_NAIVE_60
76.7
B_CELL_NAIVE_61
76.4
B_CELL_NAIVE_62
76.4
B_CELL_NAIVE_63
75.8
B_CELL_NAIVE_64
75.6
B_CELL_NAIVE_65
75.0
B_CELL_NAIVE_66
74.3
B_CELL_NAIVE_67
74.3
B_CELL_NAIVE_68
74.0
B_CELL_NAIVE_69
73.7
B_CELL_NAIVE_70
72.4
B_CELL_NAIVE_71
72.3
B_CELL_NAIVE_72
70.7
B_CELL_NAIVE_73
70.4
B_CELL_NAIVE_74
70.0
B_CELL_NAIVE_75
69.5
B_CELL_NAIVE_76
68.9
B_CELL_NAIVE_77
68.4
B_CELL_NAIVE_78
68.2
B_CELL_NAIVE_79
67.6
B_CELL_NAIVE_80
67.5
B_CELL_NAIVE_81
67.4
B_CELL_NAIVE_82
67.2
B_CELL_NAIVE_83
66.6
B_CELL_NAIVE_84
65.8
B_CELL_NAIVE_85
65.6
B_CELL_NAIVE_86
65.3
B_CELL_NAIVE_87
64.1
B_CELL_NAIVE_88
63.7
B_CELL_NAIVE_89
63.1
B_CELL_NAIVE_90
62.6
B_CELL_NAIVE_91
49.7
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