A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
197.3
nTPM
Monaco:
324.9
nTPM
Schmiedel:
324.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
197.3
HPA sample
nTPM
NK-cell nTPM: 197.3
Samples: 6
Max nTPM: 278.0
Min nTPM: 110.3
P10809_1013
110.3
P10809_1033
218.8
P10809_1052
204.3
P10809_1071
207.4
P10809_1093
278.0
P10809_1103
165.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
324.9
Monaco sample
nTPM
NK-cell nTPM: 324.9
Samples: 4
Max nTPM: 392.0
Min nTPM: 242.4
RHH5316_R3683
392.0
RHH5224_R3596
319.0
RHH5253_R3625
242.4
RHH5282_R3654
346.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
324.7
Schmiedel sample id
TPM
NK-cell TPM: 324.7
Samples: 90
Max TPM: 435.8
Min TPM: 212.4
NK_1
435.8
NK_2
429.1
NK_3
423.7
NK_4
420.5
NK_5
405.7
NK_6
399.8
NK_7
397.4
NK_8
382.9
NK_9
379.9
NK_10
379.6
NK_11
378.9
NK_12
377.9
NK_13
374.7
NK_14
370.4
NK_15
367.3
NK_16
364.3
NK_17
362.0
NK_18
361.8
NK_19
360.9
NK_20
359.6
NK_21
358.4
NK_22
352.8
NK_23
348.5
NK_24
348.1
NK_25
347.6
NK_26
347.2
NK_27
343.4
NK_28
343.0
NK_29
342.1
NK_30
341.4
NK_31
339.3
NK_32
339.1
NK_33
339.0
NK_34
338.7
NK_35
338.2
NK_36
337.0
NK_37
336.4
NK_38
336.1
NK_39
335.9
NK_40
335.8
NK_41
334.5
NK_42
334.3
NK_43
332.5
NK_44
330.4
NK_45
330.1
NK_46
325.6
NK_47
324.7
NK_48
324.0
NK_49
321.8
NK_50
321.4
NK_51
321.2
NK_52
318.7
NK_53
318.3
NK_54
316.1
NK_55
314.9
NK_56
313.1
NK_57
311.9
NK_58
309.1
NK_59
308.7
NK_60
308.1
NK_61
307.6
NK_62
305.8
NK_63
301.9
NK_64
299.2
NK_65
297.3
NK_66
293.9
NK_67
293.5
NK_68
292.6
NK_69
289.3
NK_70
286.6
NK_71
283.6
NK_72
283.3
NK_73
282.3
NK_74
281.4
NK_75
281.0
NK_76
280.6
NK_77
275.8
NK_78
269.8
NK_79
269.0
NK_80
267.1
NK_81
264.5
NK_82
262.6
NK_83
260.8
NK_84
256.9
NK_85
255.4
NK_86
250.9
NK_87
248.5
NK_88
240.0
NK_89
229.2
NK_90
212.4
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