A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
705.8
nTPM
Monaco:
580.3
nTPM
Schmiedel:
530.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
705.8
HPA sample
nTPM
Classical monocyte nTPM: 358.2
Samples: 6
Max nTPM: 431.2
Min nTPM: 277.6
P10809_1003
431.2
P10809_1020
382.6
P10809_1039
416.8
P10809_1058
277.6
P10809_1080
306.6
P10809_1107
334.4
Intermediate monocyte nTPM: 541.8
Samples: 6
Max nTPM: 646.3
Min nTPM: 409.3
P10809_1004
452.8
P10809_1023
646.3
P10809_1042
575.5
P10809_1061
602.2
P10809_1081
409.3
P10809_1108
564.9
Non-classical monocyte nTPM: 705.7
Samples: 5
Max nTPM: 1008.7
Min nTPM: 514.8
P10809_1005
581.3
P10809_1053
733.2
P10809_1072
1008.7
P10809_1082
514.8
P10809_1109
690.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
580.3
Monaco sample
nTPM
Classical monocyte nTPM: 430.9
Samples: 4
Max nTPM: 478.5
Min nTPM: 382.3
RHH5313_R3680
382.3
RHH5221_R3593
429.7
RHH5250_R3622
478.5
RHH5279_R3651
433.0
Intermediate monocyte nTPM: 532.3
Samples: 4
Max nTPM: 595.3
Min nTPM: 408.9
RHH5314_R3681
595.3
RHH5222_R3594
408.9
RHH5251_R3623
537.5
RHH5280_R3652
587.7
Non-classical monocyte nTPM: 580.3
Samples: 4
Max nTPM: 667.3
Min nTPM: 434.3
RHH5315_R3682
656.6
RHH5223_R3595
434.3
RHH5252_R3624
563.0
RHH5281_R3653
667.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
530.1
Schmiedel sample id
TPM
Classical monocyte TPM: 295.6
Samples: 91
Max TPM: 339.4
Min TPM: 252.3
MONOCYTES_1
339.4
MONOCYTES_2
338.0
MONOCYTES_3
333.2
MONOCYTES_4
329.4
MONOCYTES_5
326.9
MONOCYTES_6
324.9
MONOCYTES_7
322.5
MONOCYTES_8
322.3
MONOCYTES_9
322.0
MONOCYTES_10
321.2
MONOCYTES_11
320.5
MONOCYTES_12
320.0
MONOCYTES_13
319.0
MONOCYTES_14
316.8
MONOCYTES_15
314.9
MONOCYTES_16
314.6
MONOCYTES_17
314.5
MONOCYTES_18
314.1
MONOCYTES_19
313.5
MONOCYTES_20
312.7
MONOCYTES_21
312.2
MONOCYTES_22
312.1
MONOCYTES_23
312.0
MONOCYTES_24
310.7
MONOCYTES_25
308.4
MONOCYTES_26
307.9
MONOCYTES_27
307.9
MONOCYTES_28
307.0
MONOCYTES_29
306.1
MONOCYTES_30
305.3
MONOCYTES_31
305.3
MONOCYTES_32
305.2
MONOCYTES_33
303.1
MONOCYTES_34
302.3
MONOCYTES_35
302.1
MONOCYTES_36
302.0
MONOCYTES_37
301.9
MONOCYTES_38
299.6
MONOCYTES_39
299.0
MONOCYTES_40
298.4
MONOCYTES_41
297.8
MONOCYTES_42
297.7
MONOCYTES_43
297.6
MONOCYTES_44
297.3
MONOCYTES_45
296.9
MONOCYTES_46
294.1
MONOCYTES_47
294.0
MONOCYTES_48
293.4
MONOCYTES_49
293.2
MONOCYTES_50
293.2
MONOCYTES_51
292.2
MONOCYTES_52
291.7
MONOCYTES_53
291.7
MONOCYTES_54
291.3
MONOCYTES_55
289.4
MONOCYTES_56
289.4
MONOCYTES_57
287.9
MONOCYTES_58
287.8
MONOCYTES_59
287.7
MONOCYTES_60
286.8
MONOCYTES_61
286.2
MONOCYTES_62
285.4
MONOCYTES_63
284.6
MONOCYTES_64
284.4
MONOCYTES_65
284.3
MONOCYTES_66
283.8
MONOCYTES_67
283.3
MONOCYTES_68
281.9
MONOCYTES_69
281.2
MONOCYTES_70
280.7
MONOCYTES_71
280.7
MONOCYTES_72
278.0
MONOCYTES_73
276.0
MONOCYTES_74
275.0
MONOCYTES_75
275.0
MONOCYTES_76
273.9
MONOCYTES_77
273.6
MONOCYTES_78
273.4
MONOCYTES_79
273.1
MONOCYTES_80
272.3
MONOCYTES_81
271.4
MONOCYTES_82
270.2
MONOCYTES_83
270.2
MONOCYTES_84
269.3
MONOCYTES_85
268.1
MONOCYTES_86
267.9
MONOCYTES_87
266.4
MONOCYTES_88
264.6
MONOCYTES_89
259.4
MONOCYTES_90
254.4
MONOCYTES_91
252.3
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Non-classical monocyte TPM: 530.1
Samples: 90
Max TPM: 612.3
Min TPM: 397.9
M2_1
612.3
M2_2
604.7
M2_3
600.8
M2_4
597.7
M2_5
594.8
M2_6
592.4
M2_7
591.5
M2_8
588.0
M2_9
586.6
M2_10
585.6
M2_11
580.4
M2_12
578.9
M2_13
578.2
M2_14
573.0
M2_15
572.9
M2_16
570.8
M2_17
569.8
M2_18
566.9
M2_19
566.9
M2_20
565.8
M2_21
563.0
M2_22
562.6
M2_23
558.2
M2_24
557.0
M2_25
555.3
M2_26
554.8
M2_27
553.6
M2_28
552.8
M2_29
551.4
M2_30
551.2
M2_31
550.3
M2_32
550.1
M2_33
549.1
M2_34
547.6
M2_35
547.4
M2_36
546.4
M2_37
545.4
M2_38
545.0
M2_39
542.2
M2_40
541.1
M2_41
541.0
M2_42
540.7
M2_43
540.3
M2_44
536.8
M2_45
535.4
M2_46
533.9
M2_47
533.6
M2_48
533.0
M2_49
532.4
M2_50
530.9
M2_51
530.5
M2_52
526.4
M2_53
525.6
M2_54
524.3
M2_55
524.0
M2_56
524.0
M2_57
523.3
M2_58
521.9
M2_59
517.0
M2_60
516.4
M2_61
516.3
M2_62
516.2
M2_63
511.5
M2_64
505.7
M2_65
503.9
M2_66
503.6
M2_67
502.6
M2_68
502.3
M2_69
501.7
M2_70
496.7
M2_71
495.9
M2_72
495.8
M2_73
494.0
M2_74
493.0
M2_75
490.3
M2_76
487.8
M2_77
485.8
M2_78
485.2
M2_79
483.5
M2_80
478.7
M2_81
464.6
M2_82
462.9
M2_83
462.3
M2_84
454.5
M2_85
451.6
M2_86
450.4
M2_87
445.6
M2_88
441.6
M2_89
432.6
M2_90
397.9
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