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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB001984
Glial cells
Not detected
Neuronal cells
High
Neuronal projections
High
Synapses
Medium
HIPPOCAMPUS - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA008273
Glial cells
Not detected
Neuronal cells
High
Neuronal projections
Medium
Synapses
Medium
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
569.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 430.2
2621
Female, age 67, right hemisphere
567.8
1898
Male, age 80, left hemisphere
526.6
2148
Female, age 91, left hemisphere
448.7
1855
Male, age 76, left hemisphere
402.4
1911
Female, age 85, right hemisphere
346.8
2529
Female, age 94, left hemisphere
289.2
Dentate gyrus nTPM: 432.9
1927
Female, age 91, both hemispheres
676.5
2246
Female, age 85, both hemispheres
448.1
2531
Female, age 67, both hemispheres
440.6
2010
Male, age 76, both hemispheres
402.0
2530
Female, age 94, left hemisphere
319.8
2528
Male, age 74, both hemispheres
310.2
Entorhinal gyrus nTPM: 401.0
2613
Female, age 94, left hemisphere
507.4
1938
Female, age 85, left hemisphere
487.3
2764
Male, age 80, right hemisphere
420.6
2686
Male, age 75, right hemisphere
376.0
1787
Male, age 76, left hemisphere
359.3
2117
Female, age 91, right hemisphere
255.4
Hippocampus, CA1 nTPM: 541.8
2749
Male, age 80, left hemisphere
797.2
2527
Male, age 74, both hemispheres
593.9
1873
Female, age 85, both hemispheres
453.0
2082
Female, age 91, right hemisphere
443.3
2045
Male, age 76, both hemispheres
421.5
Hippocampus, CA2 nTPM: 443.8
1963
Male, age 80, left hemisphere
708.9
1892
Male, age 76, both hemispheres
523.3
2249
Male, age 74, both hemispheres
396.1
2113
Female, age 91, right hemisphere
387.1
2437
Female, age 94, left hemisphere
328.1
1940
Female, age 85, left hemisphere
319.4
Hippocampus, CA3 nTPM: 473.8
2137
Male, age 80, left hemisphere
716.3
2620
Female, age 94, left hemisphere
500.0
2861
Female, age 67, both hemispheres
446.6
2436
Male, age 74, both hemispheres
442.3
1867
Male, age 76, both hemispheres
400.3
1891
Female, age 85, both hemispheres
337.3
Parahippocampal cortex nTPM: 440.3
2245
Female, age 91, both hemispheres
659.7
1850
Male, age 80, both hemispheres
518.4
2250
Female, age 67, right hemisphere
503.4
1990
Female, age 91, right hemisphere
469.1
1933
Female, age 85, both hemispheres
453.3
2693
Female, age 94, both hemispheres
428.9
2532
Female, age 72, left hemisphere
374.2
2622
Female, age 67, right hemisphere
366.4
2018
Male, age 76, both hemispheres
334.0
2692
Male, age 74, both hemispheres
295.2
Perirhinal gyrus nTPM: 569.0
1847
Female, age 91, left hemisphere
852.4
2521
Female, age 94, right hemisphere
579.9
1794
Male, age 80, right hemisphere
512.4
1841
Female, age 85, right hemisphere
507.7
2848
Male, age 76, right hemisphere
392.5
Subiculum nTPM: 345.3
1901
Male, age 80, both hemispheres
428.0
1977
Female, age 85, both hemispheres
414.0
2438
Female, age 94, left hemisphere
375.9
2619
Male, age 74, both hemispheres
326.0
2729
Female, age 91, right hemisphere
272.1
2042
Male, age 76, both hemispheres
255.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
144.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 144.8
Samples: 255
Max nTPM: 483.7
Min nTPM: 10.8
Std nTPM: 94.4
Median nTPM: 137.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
483.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
470.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
403.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
395.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
383.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
381.9
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
380.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
379.7
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
370.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
349.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
329.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
308.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
307.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
307.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
303.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
301.2
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
298.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
298.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
296.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
293.5
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
292.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
282.3
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
281.1
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
280.5
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
280.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
279.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
275.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
268.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
266.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
264.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
262.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
261.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
257.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
257.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
257.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
254.0
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
248.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
245.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
244.5
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
243.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
241.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
238.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
231.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
230.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
229.6
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
229.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
229.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
225.6
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
219.7
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
219.2
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
217.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
217.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
216.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
215.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
210.6
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
210.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
209.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
207.8
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
206.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
205.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
201.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
199.7
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
199.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
197.8
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
197.2
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
196.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
194.3
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
194.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
193.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
193.2
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
191.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
190.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
189.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
189.3
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
184.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
184.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
183.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
181.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
179.3
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
178.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
177.8
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
176.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
176.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
175.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
174.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
174.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
173.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
173.7
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
171.0
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
168.1
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
168.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
167.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
167.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
167.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
166.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
164.8
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
164.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
164.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
162.4
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
161.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
160.5
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
159.6
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
157.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
156.8
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
155.8
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
153.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
153.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
151.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
151.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
150.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
149.2
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
149.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
149.0
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
148.5
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
148.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
146.8
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
146.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
144.8
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
144.4
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
143.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
142.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
141.6
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
141.6
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
139.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
138.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
138.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
138.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
137.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
137.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
137.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
137.4
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
135.4
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
133.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
125.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
124.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
124.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
124.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
122.5
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
121.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
120.6
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
118.0
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
116.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
116.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
115.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
114.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
113.3
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
111.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
111.6
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
110.4
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
109.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
108.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
106.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
105.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
104.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
102.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
101.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
101.0
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
100.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
99.9
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
99.4
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
99.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
98.5
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
98.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
98.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
92.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
92.7
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
92.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
91.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
91.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
91.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
90.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
89.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
88.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
86.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
84.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
83.4
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
82.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
82.0
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
81.9
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
81.9
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
81.5
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
79.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
72.9
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
72.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
72.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
69.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
68.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
67.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
67.4
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
66.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
66.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
66.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
66.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
65.9
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
64.6
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
64.6
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
64.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
62.9
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
62.5
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
62.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
59.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
59.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
59.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
58.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
58.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
58.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
56.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
56.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
50.3
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
49.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
49.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
48.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
48.2
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
48.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
47.7
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
43.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
43.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
41.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
41.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
40.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
39.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
38.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
38.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
36.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
36.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
35.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
34.3
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
33.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
32.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
32.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
32.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
32.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
31.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
30.0
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
28.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
27.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
27.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
26.5
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
26.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
26.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
24.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
23.9
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
23.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
23.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
22.9
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
22.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
21.2
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
20.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
17.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
16.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
16.2
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
12.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
12.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
12.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
10.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
831.8
Pig sample
Sample description
nTPM
Subiculum nTPM: 831.8
Samples: 4
Max nTPM: 1100.3
Min nTPM: 669.7
Sample A
Female
1100.3
Sample B
Female
765.3
Sample C
Male
792.0
Sample D
Male
669.7
Dorsal hippocampus nTPM: 632.8
Samples: 4
Max nTPM: 708.6
Min nTPM: 546.5
Sample A
Female
708.6
Sample B
Female
618.9
Sample C
Male
657.0
Sample D
Male
546.5
Entorhinal cortex nTPM: 722.8
Samples: 4
Max nTPM: 747.5
Min nTPM: 702.9
Sample A
Female
732.9
Sample B
Female
747.5
Sample C
Male
702.9
Sample D
Male
707.8
Ventral hippocampus nTPM: 661.0
Samples: 4
Max nTPM: 695.0
Min nTPM: 604.5
Sample A
Female
655.6
Sample B
Female
604.5
Sample C
Male
695.0
Sample D
Male
688.7
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
639.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 639.3
Samples: 4
Max nTPM: 693.7
Min nTPM: 581.3
Sample A
Male
633.2
Sample B
Male
581.3
Sample C
Female
648.9
Sample D
Female
693.7
Hippocampal formation nTPM: 501.4
Samples: 4
Max nTPM: 575.1
Min nTPM: 447.2
Sample A
Male
575.1
Sample B
Male
509.7
Sample C
Female
447.2
Sample D
Female
473.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.