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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Neuronal projections: Medium
Synapses: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

73.211
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:144.8 nTPM
HPA Brain:569.0 nTPM
GTEx:144.8 nTPM
FANTOM5:1587.6 Scaled Tags Per Million
Pig:831.8 nTPM
Mouse:639.3 nTPM
Allen mouse:18.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody CAB001984
Glial cells Not detected
Neuronal cells High
Neuronal projections High
Synapses Medium

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA008273
Glial cells Not detected
Neuronal cells High
Neuronal projections Medium
Synapses Medium

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA008273Antibody HPA012828Antibody CAB001984
Glial cells Not detectedNot detectedNot detected
Neuronal cells HighMediumMedium






HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA012828
Hippocampal formation mean intensity 73.211
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Polymorph layer of the dentate gyrus 29.728
Molecular layer of the dentate gyrus 26.627
Granular dentate gyrus 11.263
CA1 - oriens layer 39.920
CA1 - pyramidal layer 26.421
CA1 - radiatum layer 32.974
CA2 - oriens layer 64.300
CA2 - pyramidal layer 46.359
CA2 - radiatum layer 50.648
CA3 - oriens layer 63.516
CA3 - pyramidal layer 33.410
CA3 - radiatum layer 52.769
Stratum lucidum 27.688
Lacunosum moleculare 41.258
Subiculum 73.211

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

569.0
Sample id Sample description nTPM
Hippocampus
nTPM: 430.2
2621 Female, age 67, right hemisphere 567.8
1898 Male, age 80, left hemisphere 526.6
2148 Female, age 91, left hemisphere 448.7
1855 Male, age 76, left hemisphere 402.4
1911 Female, age 85, right hemisphere 346.8
2529 Female, age 94, left hemisphere 289.2
Dentate gyrus
nTPM: 432.9
1927 Female, age 91, both hemispheres 676.5
2246 Female, age 85, both hemispheres 448.1
2531 Female, age 67, both hemispheres 440.6
2010 Male, age 76, both hemispheres 402.0
2530 Female, age 94, left hemisphere 319.8
2528 Male, age 74, both hemispheres 310.2
Entorhinal gyrus
nTPM: 401.0
2613 Female, age 94, left hemisphere 507.4
1938 Female, age 85, left hemisphere 487.3
2764 Male, age 80, right hemisphere 420.6
2686 Male, age 75, right hemisphere 376.0
1787 Male, age 76, left hemisphere 359.3
2117 Female, age 91, right hemisphere 255.4
Hippocampus, CA1
nTPM: 541.8
2749 Male, age 80, left hemisphere 797.2
2527 Male, age 74, both hemispheres 593.9
1873 Female, age 85, both hemispheres 453.0
2082 Female, age 91, right hemisphere 443.3
2045 Male, age 76, both hemispheres 421.5
Hippocampus, CA2
nTPM: 443.8
1963 Male, age 80, left hemisphere 708.9
1892 Male, age 76, both hemispheres 523.3
2249 Male, age 74, both hemispheres 396.1
2113 Female, age 91, right hemisphere 387.1
2437 Female, age 94, left hemisphere 328.1
1940 Female, age 85, left hemisphere 319.4
Hippocampus, CA3
nTPM: 473.8
2137 Male, age 80, left hemisphere 716.3
2620 Female, age 94, left hemisphere 500.0
2861 Female, age 67, both hemispheres 446.6
2436 Male, age 74, both hemispheres 442.3
1867 Male, age 76, both hemispheres 400.3
1891 Female, age 85, both hemispheres 337.3
Parahippocampal cortex
nTPM: 440.3
2245 Female, age 91, both hemispheres 659.7
1850 Male, age 80, both hemispheres 518.4
2250 Female, age 67, right hemisphere 503.4
1990 Female, age 91, right hemisphere 469.1
1933 Female, age 85, both hemispheres 453.3
2693 Female, age 94, both hemispheres 428.9
2532 Female, age 72, left hemisphere 374.2
2622 Female, age 67, right hemisphere 366.4
2018 Male, age 76, both hemispheres 334.0
2692 Male, age 74, both hemispheres 295.2
Perirhinal gyrus
nTPM: 569.0
1847 Female, age 91, left hemisphere 852.4
2521 Female, age 94, right hemisphere 579.9
1794 Male, age 80, right hemisphere 512.4
1841 Female, age 85, right hemisphere 507.7
2848 Male, age 76, right hemisphere 392.5
Subiculum
nTPM: 345.3
1901 Male, age 80, both hemispheres 428.0
1977 Female, age 85, both hemispheres 414.0
2438 Female, age 94, left hemisphere 375.9
2619 Male, age 74, both hemispheres 326.0
2729 Female, age 91, right hemisphere 272.1
2042 Male, age 76, both hemispheres 255.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 144.8
Samples: 255

Max nTPM: 483.7
Min nTPM: 10.8
Std nTPM: 94.4
Median nTPM: 137.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 483.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 470.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 403.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 395.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 383.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 381.9
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 380.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 379.7
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 370.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 349.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 329.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 308.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 307.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 307.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 303.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 301.2
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 298.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 298.9
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 296.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 293.5
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 292.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 282.3
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 281.1
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 280.5
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 280.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 279.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 275.4
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 268.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 266.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 264.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 262.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 261.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 257.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 257.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 257.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 254.0
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 248.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 245.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 244.5
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 243.8
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 241.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 238.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 231.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 230.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 229.6
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 229.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 229.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 225.6
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 219.7
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 219.2
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 217.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 217.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 216.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 215.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 210.6
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 210.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 209.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 207.8
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 206.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 205.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 201.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 199.7
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 199.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 197.8
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 197.2
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 196.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 194.3
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 194.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 193.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 193.2
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 191.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 190.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 189.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 189.3
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 184.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 184.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 183.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 181.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 179.3
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 178.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 177.8
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 176.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 176.5
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 175.9
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 174.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 174.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 173.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 173.7
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 171.0
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 168.1
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 168.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 167.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 167.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 167.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 166.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 164.8
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 164.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 164.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 162.4
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 161.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 160.5
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 159.6
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 157.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 156.8
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 155.8
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 153.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 153.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 151.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 151.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 150.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 149.2
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 149.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 149.0
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 148.5
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 148.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 146.8
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 146.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 144.8
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 144.4
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 143.9
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 142.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 141.6
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 141.6
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 139.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 138.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 138.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 138.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 137.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 137.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 137.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 137.4
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 135.4
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 133.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 125.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 124.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 124.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 124.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 122.5
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 121.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 120.6
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 118.0
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 116.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 116.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 115.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 114.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 113.3
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 111.8
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 111.6
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 110.4
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 109.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 108.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 106.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 105.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 104.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 102.6
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 101.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 101.0
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 100.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 99.9
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 99.4
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 99.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 98.5
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 98.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 98.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 92.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 92.7
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 92.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 91.9
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 91.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 91.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 90.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 89.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 88.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 86.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 84.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 83.4
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 82.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 82.0
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 81.9
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 81.9
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 81.5
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 79.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 72.9
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 72.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 72.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 69.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 68.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 67.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 67.4
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 66.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 66.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 66.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 66.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 65.9
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 64.6
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 64.6
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 64.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 62.9
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 62.5
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 62.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 59.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 59.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 59.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 58.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 58.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 58.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 56.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 56.1
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 50.3
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 49.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 49.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 48.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 48.2
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 48.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 47.7
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 43.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 43.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 41.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 41.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 40.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 39.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 38.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 38.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 36.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 36.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 35.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 34.3
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 33.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 32.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 32.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 32.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 32.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 31.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 30.0
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 28.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 27.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 27.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 26.5
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 26.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 26.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 24.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 23.9
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 23.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 23.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 22.9
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 22.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 21.2
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 20.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 17.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 16.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 16.2
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 12.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 12.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 12.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 10.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1587.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1587.6
FF:10169-103B7 60 years, female 2309.8
FF:10153-102I9 76 years, female 865.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

831.8
Pig sample Sample description nTPM
Subiculum
nTPM: 831.8
Samples: 4

Max nTPM: 1100.3
Min nTPM: 669.7
Sample A Female 1100.3
Sample B Female 765.3
Sample C Male 792.0
Sample D Male 669.7
Dorsal hippocampus
nTPM: 632.8
Samples: 4

Max nTPM: 708.6
Min nTPM: 546.5
Sample A Female 708.6
Sample B Female 618.9
Sample C Male 657.0
Sample D Male 546.5
Entorhinal cortex
nTPM: 722.8
Samples: 4

Max nTPM: 747.5
Min nTPM: 702.9
Sample A Female 732.9
Sample B Female 747.5
Sample C Male 702.9
Sample D Male 707.8
Ventral hippocampus
nTPM: 661.0
Samples: 4

Max nTPM: 695.0
Min nTPM: 604.5
Sample A Female 655.6
Sample B Female 604.5
Sample C Male 695.0
Sample D Male 688.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

639.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 639.3
Samples: 4

Max nTPM: 693.7
Min nTPM: 581.3
Sample A Male 633.2
Sample B Male 581.3
Sample C Female 648.9
Sample D Female 693.7
Hippocampal formation
nTPM: 501.4
Samples: 4

Max nTPM: 575.1
Min nTPM: 447.2
Sample A Male 575.1
Sample B Male 509.7
Sample C Female 447.2
Sample D Female 473.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.8
74272037 Antisense, RP_060202_01_A04, Mouse strain C57BL/6J (56 days, male) 20.4
69549641 Antisense, RP_050309_02_D02, Mouse strain C57BL/6J (56 days, male) 17.3

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