A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
194.8
nTPM
HPA Brain:
443.6
nTPM
GTEx:
194.8
nTPM
FANTOM5:
1382.6
Scaled Tags Per Million
Macaque:
641.0
nTPM
Mouse:
835.8
nTPM
Rat:
585.3
nTPM
Pig:
756.1
nTPM
AMYGDALA - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - AMYGDALA, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RXFP1+ ...
c-2
Excitatory (VGLUT1/2)
c-3
Inhibitory (GAD1/2) CXCL14+...
c-4
Excitatory (VGLUT1/2)
c-5
Excitatory (VGLUT1/2)
c-6
Inhibitory (GAD1/2) CXCL14+...
c-7
Excitatory (VGLUT1/2)
c-8
Excitatory (VGLUT1/2)
c-9
Excitatory (VGLUT1)
c-10
Excitatory (VGLUT1)
c-11
Inhibitory (GAD1/2)
c-12
Inhibitory (GAD1/2) SST+ LH...
c-13
Excitatory (VGLUT2)
c-14
Inhibitory (GAD1/2) KIT+ LA...
c-15
Inhibitory (GAD1/2) TAC1+ L...
c-16
Excitatory (VGLUT1/2)
c-17
Inhibitory (GAD1/2) TSHZ1+
c-18
Excitatory (VGLUT1/2)
c-19
Inhibitory (GAD1/2) CXCL14+...
c-20
Excitatory (VGLUT1/2)
c-21
Excitatory (VGLUT1/2)
c-22
Excitatory (VGLUT1)
c-23
Unassigned
c-24
Inhibitory (GAD1/2) PENK+ D...
c-25
Excitatory (VGLUT1/2)
c-26
Inhibitory (GAD1/2) CXCL14+...
c-27
Inhibitory (GAD1/2) LHX6+ E...
c-28
Excitatory (VGLUT1/2) SATB2...
c-29
Inhibitory (GAD1) LHX6+
c-30
Excitatory (VGLUT1/2)
c-31
Excitatory (VGLUT1/2)
c-32
Excitatory (VGLUT1)
c-33
Inhibitory (GAD1/2) TAC1+ P...
c-34
Excitatory (VGLUT1/2)
c-35
Excitatory (VGLUT1/2) ETV1+...
c-36
Inhibitory (GAD1/2) PENK+
c-37
Excitatory (VGLUT1/2)
c-38
Excitatory (VGLUT1) FOXP2+
c-39
Excitatory (VGLUT1/2)
c-40
Excitatory (VGLUT1) SOX5+
c-41
Inhibitory (GAD1/2) NOS1+ M...
c-42
Inhibitory (GAD1/2) NOS1+ S...
c-43
Excitatory (VGLUT1/2) ETV1+
c-44
Excitatory (VGLUT1/2) NOS1+
c-45
Excitatory (VGLUT2)
c-46
Excitatory (VGLUT1)
c-47
Serotonergic Inhibitory (GA...
c-48
Excitatory (VGLUT1) FOXP2+ ...
c-49
Excitatory (VGLUT1)
c-50
Inhibitory (GAD1/2) RORB+ K
c-51
CALB2+
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - AMYGDALA, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Astrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocyte progenitor ...
c-7
Microglia
c-8
Oligodendrocytes
c-9
Astrocytes
c-10
Astrocytes (CD44+)
c-11
Microglia
c-12
Oligodendrocyte progenitor ...
c-13
Astrocytes
c-14
Oligodendrocytes
c-15
Astrocytes
c-16
Oligodendrocytes
c-17
Oligodendrocytes
c-18
Fibroblasts
c-19
Ependymal cells
c-20
Mural cells & vECs
c-21
Macrophages
c-22
Immature oligodendrocytes
c-23
Pericytes
c-24
NK-cells & T-cells
c-25
Oligodendrocyte progenitor ...
c-26
Vascular smooth muscle cell
c-27
Fibroblasts (BNC2+ KCNMA1+ ...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
443.6
Sample id
Sample description
nTPM
Basal amygdala nTPM: 392.6
2243
Female, age 91, right hemisphere
676.4
2110
Male, age 80, left hemisphere
500.8
2685
Female, age 94, left hemisphere
405.7
1955
Male, age 76, both hemispheres
313.4
2827
Female, age 67, right hemisphere
243.9
2609
Male, age 75, right hemisphere
215.7
Central amygdala nTPM: 311.1
2239
Male, age 80, left hemisphere
451.4
2701
Female, age 91, right hemisphere
443.9
1905
Male, age 76, both hemispheres
242.9
2515
Male, age 75, right hemisphere
212.0
2826
Female, age 94, left hemisphere
205.5
Corticomedial amygdala nTPM: 443.6
2829
Male, age 80, left hemisphere
612.2
2242
Female, age 91, right hemisphere
593.1
2429
Female, age 94, left hemisphere
436.9
2535
Female, age 67, right hemisphere
420.0
2240
Male, age 76, both hemispheres
389.6
2428
Male, age 75, right hemisphere
210.0
Lateral amygdala nTPM: 247.6
2255
Female, age 91, right hemisphere
379.3
1883
Male, age 76, both hemispheres
292.0
2534
Female, age 94, left hemisphere
275.9
2256
Male, age 80, left hemisphere
249.0
2516
Male, age 75, right hemisphere
160.8
2830
Female, age 67, right hemisphere
128.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
194.8
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 194.8
Samples: 181
Max nTPM: 548.5
Min nTPM: 29.6
Std nTPM: 108.2
Median nTPM: 176.1
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
548.5
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
475.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
462.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
440.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
435.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
426.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
422.4
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
411.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
406.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
390.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
387.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
386.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
384.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
384.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
377.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
367.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
364.5
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
351.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
350.0
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
347.0
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
346.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
344.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
334.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
334.2
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
326.6
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
325.7
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
323.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
322.8
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
310.3
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
300.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
291.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
290.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
288.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
285.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
280.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
279.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
279.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
277.7
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
275.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
275.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
275.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
274.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
272.4
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
267.7
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
267.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
257.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
256.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
254.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
253.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
252.9
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
252.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
251.6
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
248.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
247.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
245.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
243.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
243.5
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
237.3
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
235.3
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
234.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
234.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
233.1
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
231.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
229.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
226.4
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
225.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
222.7
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
221.3
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
218.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
216.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
213.3
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
212.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
210.4
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
209.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
208.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
207.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
206.4
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
203.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
202.4
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
195.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
194.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
192.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
190.3
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
183.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
181.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
181.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
180.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
179.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
176.3
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
176.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
176.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
174.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
172.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
172.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
165.5
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
164.8
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
162.5
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
160.4
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
159.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
159.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
158.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
158.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
158.6
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
156.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
155.9
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
155.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
154.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
153.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
152.9
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
152.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
151.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
151.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
147.5
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
146.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
143.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
141.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
140.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
139.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
139.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
139.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
137.8
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
135.7
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
133.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
131.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
130.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
130.2
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
130.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
129.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
119.4
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
115.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
112.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
112.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
110.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
110.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
109.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
107.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
106.9
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
105.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
105.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
104.7
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
100.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
96.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
95.7
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
91.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
90.6
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
89.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
87.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
84.4
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
83.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
82.7
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
82.5
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
81.7
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
80.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
80.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
77.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
76.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
74.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
74.8
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
74.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
73.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
72.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
69.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
69.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
67.9
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
64.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
63.0
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
62.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
61.5
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
58.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
52.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
51.8
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
51.2
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
50.2
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
45.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
41.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
40.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
35.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
35.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
34.3
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
33.9
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
29.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
641.0
Macaque sample
Sample description
nTPM
Amygdala nTPM: 641.1
Samples: 2
Max nTPM: 739.3
Min nTPM: 542.8
Sample A
542.8
Sample B
739.3
AMYGDALA - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
756.1
Pig sample
Sample description
nTPM
Amygdala nTPM: 756.1
Samples: 4
Max nTPM: 899.4
Min nTPM: 639.0
Sample A
Female
899.4
Sample B
Female
639.0
Sample C
Male
696.8
Sample D
Male
789.0
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
835.8
Mouse sample
Sample description
nTPM
Amygdala nTPM: 835.8
Samples: 4
Max nTPM: 929.3
Min nTPM: 734.4
Sample A
929.3
Sample B
734.4
Sample C
840.5
Sample D
838.9
AMYGDALA - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
585.3
Rat sample
Sample description
nTPM
Amygdala nTPM: 585.3
Samples: 4
Max nTPM: 646.4
Min nTPM: 553.6
Sample A
581.9
Sample A
646.4
Sample A
559.4
Sample A
553.6
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The Human Protein Atlas project is funded
