On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
92.2
nTPM
HPA Brain:
418.4
nTPM
GTEx:
92.2
nTPM
FANTOM5:
46.4
Scaled Tags Per Million
Macaque:
442.7
nTPM
Mouse:
532.4
nTPM
Rat:
379.9
nTPM
Pig:
553.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
418.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 210.0
1827
Male, age 72, unknown
278.7
2219
Male, age 76, both hemispheres
267.8
2666
Male, age 74, left hemisphere
242.9
1870
Female, age 42, unknown
221.3
2411
Female, age 72, unknown
202.3
2828
Female, age 72, unknown
196.4
1833
Male, age 53, unknown
191.8
2586
Male, age 75, left hemisphere
168.7
2019
Male, age 18, unknown
166.4
1830
Male, age 51, unknown
164.0
Dorsal raphe nucleus nTPM: 266.9
2298
Female, age 72, unknown
341.0
2047
Male, age 72, unknown
282.9
1828
Male, age 53, unknown
265.8
2750
Male, age 76, both hemispheres
250.1
2016
Female, age 72, unknown
194.5
Inferior colliculus nTPM: 278.1
2097
Female, age 72, unknown
330.2
2849
Male, age 72, unknown
284.9
1848
Female, age 42, unknown
276.7
1890
Male, age 53, unknown
220.5
Median raphe nucleus nTPM: 418.4
2220
Male, age 76, midline
418.4
Periaquaductal grey, anterior nTPM: 268.6
2502
Female, age 75, unknown
311.1
1795
Male, age 51, unknown
261.8
1947
Male, age 18, unknown
233.1
Periaquaductal grey, dorsal nTPM: 246.7
1840
Male, age 53, unknown
318.7
2850
Male, age 76, both hemispheres
247.3
2464
Female, age 72, unknown
211.9
1831
Male, age 72, unknown
209.0
Periaquaductal grey, lateral nTPM: 211.2
2053
Male, age 18, unknown
225.1
2140
Male, age 76, both hemispheres
220.9
2272
Male, age 74, both hemispheres
187.5
Pretectal area nTPM: 253.9
1816
Male, age 51, unknown
342.7
2224
Female, age 72, unknown
334.7
1944
Female, age 72, unknown
318.3
1817
Female, age 42, unknown
275.0
2007
Male, age 72, unknown
257.8
2825
Male, age 18, unknown
254.8
1815
Male, age 53, unknown
242.2
2667
Female, age 75, unknown
221.2
2316
Male, age 76, right hemisphere
187.7
2407
Male, age 75, both hemispheres
185.2
2273
Male, age 74, both hemispheres
173.8
Red nucleus nTPM: 133.8
2584
Male, age 75, left hemisphere
181.8
1821
Female, age 72, unknown
160.8
2785
Male, age 18, unknown
159.5
2227
Male, age 72, unknown
139.5
2725
Female, age 75, unknown
138.8
2769
Male, age 72, unknown
135.6
2503
Female, age 72, unknown
127.4
1954
Female, age 42, unknown
121.9
2823
Male, age 76, right hemisphere
116.6
2588
Male, age 74, left hemisphere
112.8
1865
Male, age 51, unknown
109.4
1904
Male, age 53, unknown
101.9
Substantia nigra nTPM: 263.7
1916
Female, age 42, unknown
366.6
1941
Male, age 53, unknown
318.5
2241
Male, age 72, unknown
311.7
2665
Male, age 74, both hemispheres
292.9
1889
Female, age 72, unknown
280.5
1851
Male, age 51, unknown
271.8
2409
Female, age 72, unknown
260.6
2699
Male, age 18, unknown
238.4
2590
Female, age 75, unknown
149.8
2583
Male, age 75, right hemisphere
146.5
Superior colliculus nTPM: 229.5
2668
Female, age 75, unknown
340.7
1895
Male, age 76, right hemisphere
278.6
2087
Female, age 72, unknown
267.3
1796
Male, age 53, unknown
258.6
2261
Male, age 18, unknown
250.7
1839
Male, age 51, unknown
236.0
2664
Male, age 75, both hemispheres
209.1
2587
Male, age 74, left hemisphere
173.3
1913
Female, age 42, unknown
157.8
1995
Male, age 72, unknown
122.5
Ventral tegmental area nTPM: 261.3
2218
Male, age 76, both hemispheres
316.2
1915
Female, age 42, unknown
287.3
1942
Male, age 51, unknown
253.0
2410
Female, age 72, unknown
238.3
2223
Female, age 72, unknown
236.7
2021
Male, age 53, unknown
236.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 92.2
Samples: 183
Max nTPM: 406.7
Min nTPM: 7.0
Std nTPM: 79.6
Median nTPM: 61.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
406.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
385.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
332.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
301.1
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
282.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
279.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
278.2
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
265.4
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
258.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
253.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
253.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
251.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
246.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
233.9
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
230.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
225.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
224.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
223.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
213.9
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
207.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
201.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
195.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
194.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
191.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
189.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
187.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
184.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
179.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
171.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
164.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
161.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
153.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
153.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
153.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
150.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
149.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
147.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
146.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
146.2
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
142.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
141.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
140.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
140.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
139.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
137.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
135.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
132.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
130.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
126.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
124.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
122.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
119.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
117.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
114.8
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
109.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
108.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
107.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
106.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
106.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
106.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
106.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
104.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
104.3
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
101.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
100.7
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
100.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
97.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
96.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
95.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
95.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
95.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
94.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
88.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
85.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
81.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
81.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
79.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
78.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
78.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
78.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
74.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
74.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
74.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
72.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
69.3
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
67.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
66.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
66.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
66.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
64.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
63.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
61.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
61.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
60.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
60.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
59.5
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
59.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
59.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
57.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
57.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
56.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
56.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
53.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
52.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
51.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
51.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
50.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
50.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
49.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
47.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
47.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
46.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
46.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
46.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
45.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
45.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
44.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
44.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
41.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
41.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
40.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
38.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
38.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
37.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
36.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
36.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
35.6
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
35.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
35.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
35.4
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
34.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
34.5
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
34.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
34.3
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
34.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
32.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
32.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
32.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
31.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
30.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
29.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
28.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
28.5
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
28.3
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
27.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
27.9
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
27.6
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
27.0
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
27.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
26.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
26.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
26.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
25.6
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
25.4
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
24.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
24.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
23.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
23.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
22.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
22.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
21.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
21.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
20.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
20.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
19.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
18.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
18.6
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
18.6
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
18.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
18.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
16.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
16.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
15.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
15.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
13.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
13.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
12.6
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
10.6
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
10.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
9.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
9.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
8.9
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
7.0
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
442.7
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 356.0
Samples: 1
Max nTPM: 356.0
Min nTPM: 356.0
Sample A
356.0
Midbrain nTPM: 428.0
Samples: 1
Max nTPM: 428.0
Min nTPM: 428.0
Sample A
428.0
Superior colliculi nTPM: 442.7
Samples: 1
Max nTPM: 442.7
Min nTPM: 442.7
Sample A
442.7
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
553.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 336.6
Samples: 3
Max nTPM: 424.6
Min nTPM: 222.7
Sample A
Female
362.5
Sample B
Female
222.7
Sample C
Male
424.6
Midbrain nTPM: 553.3
Samples: 3
Max nTPM: 617.1
Min nTPM: 461.4
Sample B
Female
461.4
Sample C
Male
581.3
Sample D
Male
617.1
Periaqueductal gray nTPM: 395.1
Samples: 3
Max nTPM: 449.7
Min nTPM: 309.9
Sample B
Female
449.7
Sample C
Male
425.6
Sample D
Male
309.9
Superior colliculi nTPM: 379.4
Samples: 4
Max nTPM: 502.0
Min nTPM: 201.3
Sample A
Female
412.8
Sample B
Female
201.3
Sample C
Male
401.6
Sample D
Male
502.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
532.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 532.5
Samples: 4
Max nTPM: 583.7
Min nTPM: 487.5
Sample A
487.5
Sample B
505.0
Sample C
553.6
Sample D
583.7
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
379.9
Rat sample
Sample description
nTPM
Midbrain nTPM: 379.9
Samples: 4
Max nTPM: 388.0
Min nTPM: 369.4
Sample A
369.4
Sample A
388.0
Sample A
383.5
Sample A
378.7
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
