MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.2 nTPM
HPA Brain:419.7 nTPM
GTEx:92.2 nTPM
FANTOM5:46.4 Scaled Tags Per Million
Pig:439.4 nTPM
Mouse:438.2 nTPM
Allen mouse:15.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 419.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 209.5
1827 Male, age 72, unknown 277.9
2219 Male, age 76, both hemispheres 268.7
2666 Male, age 74, left hemisphere 242.2
1870 Female, age 42, unknown 220.6
2411 Female, age 72, unknown 201.8
2828 Female, age 72, unknown 195.8
1833 Male, age 53, unknown 191.3
2586 Male, age 75, left hemisphere 167.0
2019 Male, age 18, unknown 166.0
1830 Male, age 51, unknown 163.5
Dorsal raphe nucleus
nTPM: 266.4
2298 Female, age 72, unknown 339.9
2047 Male, age 72, unknown 282.3
1828 Male, age 53, unknown 265.1
2750 Male, age 76, both hemispheres 250.9
2016 Female, age 72, unknown 193.8
Inferior colliculus
nTPM: 277.3
2097 Female, age 72, unknown 329.2
2849 Male, age 72, unknown 284.1
1848 Female, age 42, unknown 275.8
1890 Male, age 53, unknown 219.9
Median raphe nucleus
nTPM: 419.7
2220 Male, age 76, midline 419.7
Periaquaductal grey, anterior
nTPM: 267.8
2502 Female, age 75, unknown 310.1
1795 Male, age 51, unknown 260.9
1947 Male, age 18, unknown 232.5
Periaquaductal grey, dorsal
nTPM: 246.4
1840 Male, age 53, unknown 318.0
2850 Male, age 76, both hemispheres 248.0
2464 Female, age 72, unknown 211.3
1831 Male, age 72, unknown 208.4
Periaquaductal grey, lateral
nTPM: 211.0
2053 Male, age 18, unknown 224.5
2140 Male, age 76, both hemispheres 221.5
2272 Male, age 74, both hemispheres 186.9
Pretectal area
nTPM: 253.2
1816 Male, age 51, unknown 341.9
2224 Female, age 72, unknown 333.6
1944 Female, age 72, unknown 317.5
1817 Female, age 42, unknown 274.2
2007 Male, age 72, unknown 257.1
2825 Male, age 18, unknown 254.1
1815 Male, age 53, unknown 241.7
2667 Female, age 75, unknown 220.6
2316 Male, age 76, right hemisphere 188.3
2407 Male, age 75, both hemispheres 183.4
2273 Male, age 74, both hemispheres 173.2
Red nucleus
nTPM: 133.4
2584 Male, age 75, left hemisphere 180.0
1821 Female, age 72, unknown 160.4
2785 Male, age 18, unknown 159.1
2227 Male, age 72, unknown 139.1
2725 Female, age 75, unknown 138.3
2769 Male, age 72, unknown 135.2
2503 Female, age 72, unknown 127.1
1954 Female, age 42, unknown 121.5
2823 Male, age 76, right hemisphere 116.9
2588 Male, age 74, left hemisphere 112.6
1865 Male, age 51, unknown 109.1
1904 Male, age 53, unknown 101.6
Substantia nigra
nTPM: 262.9
1916 Female, age 42, unknown 365.2
1941 Male, age 53, unknown 317.7
2241 Male, age 72, unknown 311.0
2665 Male, age 74, both hemispheres 292.0
1889 Female, age 72, unknown 279.5
1851 Male, age 51, unknown 271.0
2409 Female, age 72, unknown 260.0
2699 Male, age 18, unknown 237.7
2590 Female, age 75, unknown 149.4
2583 Male, age 75, right hemisphere 145.1
Superior colliculus
nTPM: 228.8
2668 Female, age 75, unknown 339.6
1895 Male, age 76, right hemisphere 279.6
2087 Female, age 72, unknown 266.5
1796 Male, age 53, unknown 257.9
2261 Male, age 18, unknown 250.0
1839 Male, age 51, unknown 235.3
2664 Male, age 75, both hemispheres 207.0
2587 Male, age 74, left hemisphere 172.8
1913 Female, age 42, unknown 157.3
1995 Male, age 72, unknown 122.2
Ventral tegmental area
nTPM: 260.8
2218 Male, age 76, both hemispheres 317.2
1915 Female, age 42, unknown 286.4
1942 Male, age 51, unknown 252.2
2410 Female, age 72, unknown 237.6
2223 Female, age 72, unknown 236.0
2021 Male, age 53, unknown 235.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 92.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.2
Samples: 183

Max nTPM: 406.7
Min nTPM: 7.0
Std nTPM: 79.6
Median nTPM: 61.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 406.7
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 385.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 332.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 301.1
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 282.1
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 279.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 278.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 265.4
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 258.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 253.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 253.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.4
FF:10158-103A5 76 years, female 46.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 439.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 281.8
Samples: 4

Max nTPM: 422.6
Min nTPM: 122.7
Sample A Female 360.1
Sample B Female 221.9
Sample C Male 422.6
Sample D Male 122.7
Midbrain
nTPM: 439.3
Samples: 4

Max nTPM: 615.7
Min nTPM: 102.4
Sample A Female 102.4
Sample B Female 459.7
Sample C Male 579.5
Sample D Male 615.7
Periaqueductal gray
nTPM: 394.2
Samples: 3

Max nTPM: 448.4
Min nTPM: 309.3
Sample B Female 448.4
Sample C Male 424.9
Sample D Male 309.3
Superior colliculi
nTPM: 377.4
Samples: 4

Max nTPM: 499.6
Min nTPM: 200.4
Sample A Female 410.0
Sample B Female 200.4
Sample C Male 399.7
Sample D Male 499.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 438.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 438.2
Samples: 4

Max nTPM: 459.4
Min nTPM: 385.8
Sample A Male 385.8
Sample B Male 458.8
Sample C Female 448.8
Sample D Female 459.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.9
74272037 Antisense, RP_060202_01_A04, Mouse strain C57BL/6J (56 days, male) 17.2
69549641 Antisense, RP_050309_02_D02, Mouse strain C57BL/6J (56 days, male) 14.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo