On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
134.3
nTPM
HPA Brain:
222.8
nTPM
GTEx:
134.3
nTPM
FANTOM5:
252.4
Scaled Tags Per Million
Macaque:
247.4
nTPM
Mouse:
366.0
nTPM
Rat:
221.7
nTPM
Pig:
243.7
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
222.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 188.9
2666
Male, age 74, left hemisphere
244.2
2019
Male, age 18, unknown
214.7
1827
Male, age 72, unknown
210.8
2828
Female, age 72, unknown
192.3
2586
Male, age 75, left hemisphere
188.3
2219
Male, age 76, both hemispheres
181.1
1870
Female, age 42, unknown
178.9
2411
Female, age 72, unknown
165.8
1833
Male, age 53, unknown
160.6
1830
Male, age 51, unknown
152.5
Dorsal raphe nucleus nTPM: 182.2
1828
Male, age 53, unknown
203.9
2298
Female, age 72, unknown
203.7
2047
Male, age 72, unknown
178.0
2016
Female, age 72, unknown
167.9
2750
Male, age 76, both hemispheres
157.6
Inferior colliculus nTPM: 204.4
1848
Female, age 42, unknown
218.3
2097
Female, age 72, unknown
213.7
1890
Male, age 53, unknown
202.8
2849
Male, age 72, unknown
182.8
Median raphe nucleus nTPM: 181.0
2220
Male, age 76, midline
181.0
Periaquaductal grey, anterior nTPM: 215.1
2502
Female, age 75, unknown
231.0
1947
Male, age 18, unknown
222.6
1795
Male, age 51, unknown
191.6
Periaquaductal grey, dorsal nTPM: 188.7
1840
Male, age 53, unknown
205.3
1831
Male, age 72, unknown
185.0
2464
Female, age 72, unknown
182.5
2850
Male, age 76, both hemispheres
181.8
Periaquaductal grey, lateral nTPM: 174.3
2140
Male, age 76, both hemispheres
185.0
2272
Male, age 74, both hemispheres
171.5
2053
Male, age 18, unknown
166.5
Pretectal area nTPM: 222.8
1816
Male, age 51, unknown
305.5
1944
Female, age 72, unknown
285.1
1817
Female, age 42, unknown
266.5
2007
Male, age 72, unknown
265.2
2667
Female, age 75, unknown
219.8
1815
Male, age 53, unknown
213.2
2224
Female, age 72, unknown
194.9
2273
Male, age 74, both hemispheres
186.8
2825
Male, age 18, unknown
185.9
2316
Male, age 76, right hemisphere
167.4
2407
Male, age 75, both hemispheres
160.7
Red nucleus nTPM: 172.8
1821
Female, age 72, unknown
198.8
2725
Female, age 75, unknown
192.5
2785
Male, age 18, unknown
189.4
2503
Female, age 72, unknown
186.2
1954
Female, age 42, unknown
177.6
2584
Male, age 75, left hemisphere
168.9
2227
Male, age 72, unknown
164.5
2588
Male, age 74, left hemisphere
163.7
2769
Male, age 72, unknown
162.9
1904
Male, age 53, unknown
159.4
2823
Male, age 76, right hemisphere
155.9
1865
Male, age 51, unknown
154.1
Substantia nigra nTPM: 209.9
1916
Female, age 42, unknown
265.8
1889
Female, age 72, unknown
235.7
2241
Male, age 72, unknown
229.5
1851
Male, age 51, unknown
226.8
2665
Male, age 74, both hemispheres
222.2
1941
Male, age 53, unknown
218.2
2590
Female, age 75, unknown
187.1
2409
Female, age 72, unknown
178.7
2583
Male, age 75, right hemisphere
171.7
2699
Male, age 18, unknown
162.8
Superior colliculus nTPM: 191.0
2087
Female, age 72, unknown
256.8
2261
Male, age 18, unknown
225.4
1796
Male, age 53, unknown
209.4
1839
Male, age 51, unknown
182.0
2587
Male, age 74, left hemisphere
181.7
2664
Male, age 75, both hemispheres
180.0
1895
Male, age 76, right hemisphere
174.9
2668
Female, age 75, unknown
172.6
1913
Female, age 42, unknown
167.7
1995
Male, age 72, unknown
159.3
Ventral tegmental area nTPM: 201.6
1915
Female, age 42, unknown
230.4
2218
Male, age 76, both hemispheres
212.1
1942
Male, age 51, unknown
208.9
2410
Female, age 72, unknown
189.2
2223
Female, age 72, unknown
186.9
2021
Male, age 53, unknown
182.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
134.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 134.3
Samples: 183
Max nTPM: 277.9
Min nTPM: 65.7
Std nTPM: 37.1
Median nTPM: 129.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
277.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
275.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
255.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
228.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
228.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
228.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
224.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
215.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
197.1
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
197.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
192.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
192.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
187.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
186.6
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
185.5
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
183.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
181.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
180.0
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
179.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
174.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
174.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
171.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
171.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
171.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
170.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
170.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
169.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
168.4
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
166.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
165.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
163.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
163.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
163.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
163.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
162.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
162.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
161.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
161.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
161.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
160.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
159.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
159.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
158.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
158.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
157.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
157.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
157.1
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
156.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
156.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
153.7
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
152.3
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
152.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
150.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
150.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
149.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
149.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
149.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
148.9
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
148.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
147.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
146.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
146.1
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
144.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
143.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
143.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
141.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
141.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
141.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
140.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
139.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
139.5
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
138.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
138.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
138.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
137.4
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
137.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
137.0
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
134.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
134.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
134.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
134.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
134.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
133.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
133.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
132.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
132.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
130.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
130.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
130.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
129.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
129.3
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
129.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
127.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
127.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
126.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
125.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
125.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
125.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
125.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
125.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
125.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
124.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
124.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
124.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
123.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
121.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
121.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
121.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
121.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
120.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
120.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
120.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
119.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
118.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
118.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
118.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
118.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
117.2
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
116.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
115.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
114.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
114.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
113.7
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
112.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
112.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
111.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
111.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
111.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
111.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
110.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
110.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
110.2
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
109.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
108.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
108.7
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
108.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
108.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
107.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
106.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
105.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
105.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
105.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
105.3
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
104.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
103.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
102.6
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
101.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
101.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
101.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
101.5
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
100.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
100.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
99.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
99.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
99.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
98.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
97.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
97.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
96.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
96.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
96.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
95.7
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
95.7
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
94.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
94.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
94.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
94.1
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
92.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
91.6
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
89.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
87.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
87.0
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
86.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
85.2
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
85.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
85.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
82.0
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
81.9
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
81.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
76.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
74.3
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
70.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
65.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
247.4
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 157.9
Samples: 1
Max nTPM: 157.9
Min nTPM: 157.9
Sample A
157.9
Midbrain nTPM: 200.3
Samples: 1
Max nTPM: 200.3
Min nTPM: 200.3
Sample A
200.3
Superior colliculi nTPM: 247.4
Samples: 1
Max nTPM: 247.4
Min nTPM: 247.4
Sample A
247.4
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
243.7
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 219.6
Samples: 3
Max nTPM: 240.9
Min nTPM: 188.6
Sample A
Female
229.4
Sample B
Female
188.6
Sample C
Male
240.9
Midbrain nTPM: 208.4
Samples: 3
Max nTPM: 248.6
Min nTPM: 155.8
Sample B
Female
155.8
Sample C
Male
248.6
Sample D
Male
220.7
Periaqueductal gray nTPM: 156.7
Samples: 3
Max nTPM: 181.8
Min nTPM: 136.6
Sample B
Female
151.8
Sample C
Male
181.8
Sample D
Male
136.6
Superior colliculi nTPM: 243.7
Samples: 4
Max nTPM: 270.7
Min nTPM: 225.9
Sample A
Female
235.1
Sample B
Female
270.7
Sample C
Male
243.1
Sample D
Male
225.9
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
366.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 366.0
Samples: 4
Max nTPM: 395.6
Min nTPM: 332.1
Sample A
332.1
Sample B
374.2
Sample C
395.6
Sample D
362.2
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
221.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 221.8
Samples: 4
Max nTPM: 225.3
Min nTPM: 213.9
Sample A
223.4
Sample A
224.4
Sample A
225.3
Sample A
213.9
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The Human Protein Atlas project is funded
