A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
40.7
nTPM
Monaco:
58.8
nTPM
Schmiedel:
118.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.7
HPA sample
nTPM
Memory B-cell nTPM: 40.7
Samples: 6
Max nTPM: 52.5
Min nTPM: 29.6
P10809_1017
46.4
P10809_1025
52.5
P10809_1044
29.6
P10809_1063
36.7
P10809_1092
41.2
P10809_1105
38.1
Naive B-cell nTPM: 31.4
Samples: 6
Max nTPM: 61.4
Min nTPM: 19.2
P10809_1011
25.3
P10809_1029
28.6
P10809_1048
61.4
P10809_1067
19.2
P10809_1091
27.0
P10809_1104
26.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 40.2
Samples: 4
Max nTPM: 50.8
Min nTPM: 27.5
RHH5310_R3677
41.5
RHH5218_R3590
27.5
RHH5247_R3619
41.1
RHH5276_R3648
50.8
Naive B-cell nTPM: 30.2
Samples: 4
Max nTPM: 43.4
Min nTPM: 16.4
RHH5308_R3675
16.4
RHH5216_R3588
43.4
RHH5245_R3617
31.0
RHH5274_R3646
30.0
Non-switched memory B-cell nTPM: 33.0
Samples: 4
Max nTPM: 49.9
Min nTPM: 23.8
RHH5309_R3676
27.3
RHH5217_R3589
23.8
RHH5246_R3618
49.9
RHH5275_R3647
30.9
Plasmablast nTPM: 58.8
Samples: 4
Max nTPM: 73.2
Min nTPM: 47.5
RHH5312_R3679
73.2
RHH5220_R3592
60.5
RHH5249_R3621
47.5
RHH5278_R3650
54.1
Switched memory B-cell nTPM: 36.8
Samples: 4
Max nTPM: 39.7
Min nTPM: 30.3
RHH5311_R3678
39.2
RHH5219_R3591
38.1
RHH5248_R3620
39.7
RHH5277_R3649
30.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
118.8
Schmiedel sample id
TPM
Naive B-cell TPM: 118.8
Samples: 91
Max TPM: 147.1
Min TPM: 74.4
B_CELL_NAIVE_1
147.1
B_CELL_NAIVE_2
141.2
B_CELL_NAIVE_3
140.3
B_CELL_NAIVE_4
138.5
B_CELL_NAIVE_5
137.4
B_CELL_NAIVE_6
135.7
B_CELL_NAIVE_7
135.2
B_CELL_NAIVE_8
134.6
B_CELL_NAIVE_9
134.6
B_CELL_NAIVE_10
133.3
B_CELL_NAIVE_11
132.4
B_CELL_NAIVE_12
131.6
B_CELL_NAIVE_13
131.4
B_CELL_NAIVE_14
130.9
B_CELL_NAIVE_15
130.9
B_CELL_NAIVE_16
130.8
B_CELL_NAIVE_17
128.0
B_CELL_NAIVE_18
127.1
B_CELL_NAIVE_19
126.7
B_CELL_NAIVE_20
126.6
B_CELL_NAIVE_21
126.5
B_CELL_NAIVE_22
126.5
B_CELL_NAIVE_23
126.5
B_CELL_NAIVE_24
125.7
B_CELL_NAIVE_25
125.2
B_CELL_NAIVE_26
125.2
B_CELL_NAIVE_27
125.2
B_CELL_NAIVE_28
124.8
B_CELL_NAIVE_29
124.8
B_CELL_NAIVE_30
124.3
B_CELL_NAIVE_31
124.1
B_CELL_NAIVE_32
124.0
B_CELL_NAIVE_33
124.0
B_CELL_NAIVE_34
123.9
B_CELL_NAIVE_35
123.8
B_CELL_NAIVE_36
123.7
B_CELL_NAIVE_37
123.3
B_CELL_NAIVE_38
123.3
B_CELL_NAIVE_39
122.9
B_CELL_NAIVE_40
122.7
B_CELL_NAIVE_41
121.9
B_CELL_NAIVE_42
121.8
B_CELL_NAIVE_43
121.4
B_CELL_NAIVE_44
121.0
B_CELL_NAIVE_45
120.1
B_CELL_NAIVE_46
119.9
B_CELL_NAIVE_47
119.8
B_CELL_NAIVE_48
119.1
B_CELL_NAIVE_49
118.8
B_CELL_NAIVE_50
118.6
B_CELL_NAIVE_51
117.9
B_CELL_NAIVE_52
117.8
B_CELL_NAIVE_53
117.7
B_CELL_NAIVE_54
117.6
B_CELL_NAIVE_55
116.5
B_CELL_NAIVE_56
116.4
B_CELL_NAIVE_57
116.2
B_CELL_NAIVE_58
115.9
B_CELL_NAIVE_59
115.8
B_CELL_NAIVE_60
115.8
B_CELL_NAIVE_61
115.5
B_CELL_NAIVE_62
115.4
B_CELL_NAIVE_63
115.4
B_CELL_NAIVE_64
115.2
B_CELL_NAIVE_65
114.5
B_CELL_NAIVE_66
113.7
B_CELL_NAIVE_67
113.6
B_CELL_NAIVE_68
113.1
B_CELL_NAIVE_69
112.9
B_CELL_NAIVE_70
111.8
B_CELL_NAIVE_71
111.3
B_CELL_NAIVE_72
111.0
B_CELL_NAIVE_73
109.6
B_CELL_NAIVE_74
109.6
B_CELL_NAIVE_75
109.4
B_CELL_NAIVE_76
109.4
B_CELL_NAIVE_77
107.7
B_CELL_NAIVE_78
107.4
B_CELL_NAIVE_79
107.4
B_CELL_NAIVE_80
106.0
B_CELL_NAIVE_81
105.3
B_CELL_NAIVE_82
105.0
B_CELL_NAIVE_83
104.1
B_CELL_NAIVE_84
102.9
B_CELL_NAIVE_85
102.6
B_CELL_NAIVE_86
101.6
B_CELL_NAIVE_87
99.3
B_CELL_NAIVE_88
90.0
B_CELL_NAIVE_89
84.0
B_CELL_NAIVE_90
80.7
B_CELL_NAIVE_91
74.4
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