A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.0
nTPM
Monaco:
37.8
nTPM
Schmiedel:
154.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.0
HPA sample
nTPM
NK-cell nTPM: 39.0
Samples: 6
Max nTPM: 47.9
Min nTPM: 35.3
P10809_1013
35.3
P10809_1033
37.1
P10809_1052
36.9
P10809_1071
39.3
P10809_1093
47.9
P10809_1103
37.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.8
Monaco sample
nTPM
NK-cell nTPM: 37.8
Samples: 4
Max nTPM: 47.5
Min nTPM: 29.3
RHH5316_R3683
36.3
RHH5224_R3596
47.5
RHH5253_R3625
38.0
RHH5282_R3654
29.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
154.6
Schmiedel sample id
TPM
NK-cell TPM: 154.6
Samples: 90
Max TPM: 212.7
Min TPM: 84.6
NK_1
212.7
NK_2
200.0
NK_3
193.8
NK_4
186.2
NK_5
181.4
NK_6
181.1
NK_7
180.3
NK_8
179.9
NK_9
177.6
NK_10
175.1
NK_11
175.1
NK_12
174.1
NK_13
172.4
NK_14
171.9
NK_15
171.8
NK_16
171.5
NK_17
171.4
NK_18
170.6
NK_19
170.6
NK_20
170.4
NK_21
170.3
NK_22
169.9
NK_23
168.1
NK_24
167.8
NK_25
167.3
NK_26
167.1
NK_27
166.6
NK_28
165.9
NK_29
165.2
NK_30
164.0
NK_31
163.9
NK_32
162.9
NK_33
162.1
NK_34
161.7
NK_35
160.6
NK_36
160.0
NK_37
159.6
NK_38
158.7
NK_39
158.4
NK_40
157.0
NK_41
156.2
NK_42
154.0
NK_43
153.7
NK_44
153.2
NK_45
153.1
NK_46
153.0
NK_47
152.9
NK_48
152.7
NK_49
152.3
NK_50
151.3
NK_51
151.3
NK_52
151.2
NK_53
150.2
NK_54
150.1
NK_55
149.0
NK_56
149.0
NK_57
148.4
NK_58
148.0
NK_59
147.9
NK_60
147.9
NK_61
147.7
NK_62
147.7
NK_63
146.9
NK_64
146.3
NK_65
143.8
NK_66
143.8
NK_67
141.8
NK_68
141.0
NK_69
140.6
NK_70
140.5
NK_71
139.1
NK_72
138.1
NK_73
138.1
NK_74
137.8
NK_75
137.4
NK_76
136.0
NK_77
135.7
NK_78
134.1
NK_79
132.2
NK_80
131.9
NK_81
131.2
NK_82
129.8
NK_83
129.5
NK_84
129.0
NK_85
128.4
NK_86
126.4
NK_87
124.8
NK_88
119.9
NK_89
118.6
NK_90
84.6
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