MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:272.7 nTPM
HPA Brain:360.0 nTPM
GTEx:272.7 nTPM
FANTOM5:198.4 Scaled Tags Per Million
Pig:108.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 360.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 232.7
2411 Female, age 72, unknown 264.1
2828 Female, age 72, unknown 255.3
1827 Male, age 72, unknown 248.3
2019 Male, age 18, unknown 245.8
1870 Female, age 42, unknown 233.8
2586 Male, age 75, left hemisphere 231.2
1833 Male, age 53, unknown 229.5
2666 Male, age 74, left hemisphere 229.4
1830 Male, age 51, unknown 212.9
2219 Male, age 76, both hemispheres 176.6
Dorsal raphe nucleus
nTPM: 360.0
2298 Female, age 72, unknown 421.3
2047 Male, age 72, unknown 416.2
1828 Male, age 53, unknown 370.4
2016 Female, age 72, unknown 299.4
2750 Male, age 76, both hemispheres 292.4
Inferior colliculus
nTPM: 290.7
2097 Female, age 72, unknown 336.7
1890 Male, age 53, unknown 297.4
1848 Female, age 42, unknown 286.1
2849 Male, age 72, unknown 242.6
Median raphe nucleus
nTPM: 295.7
2220 Male, age 76, midline 295.7
Periaquaductal grey, anterior
nTPM: 301.6
1947 Male, age 18, unknown 369.8
2502 Female, age 75, unknown 270.6
1795 Male, age 51, unknown 264.3
Periaquaductal grey, dorsal
nTPM: 260.9
1840 Male, age 53, unknown 295.0
2850 Male, age 76, both hemispheres 261.1
2464 Female, age 72, unknown 257.8
1831 Male, age 72, unknown 229.6
Periaquaductal grey, lateral
nTPM: 246.9
2272 Male, age 74, both hemispheres 267.8
2140 Male, age 76, both hemispheres 241.7
2053 Male, age 18, unknown 231.2
Pretectal area
nTPM: 240.8
2224 Female, age 72, unknown 278.6
2273 Male, age 74, both hemispheres 274.5
1817 Female, age 42, unknown 264.5
2667 Female, age 75, unknown 258.7
2825 Male, age 18, unknown 250.8
1944 Female, age 72, unknown 248.5
2007 Male, age 72, unknown 245.4
1816 Male, age 51, unknown 245.3
2316 Male, age 76, right hemisphere 207.8
1815 Male, age 53, unknown 202.6
2407 Male, age 75, both hemispheres 172.5
Red nucleus
nTPM: 261.3
1821 Female, age 72, unknown 349.0
2823 Male, age 76, right hemisphere 306.2
2725 Female, age 75, unknown 296.4
1954 Female, age 42, unknown 292.0
2503 Female, age 72, unknown 266.1
2769 Male, age 72, unknown 255.8
2227 Male, age 72, unknown 255.4
1865 Male, age 51, unknown 241.8
2588 Male, age 74, left hemisphere 237.7
1904 Male, age 53, unknown 236.2
2785 Male, age 18, unknown 213.4
2584 Male, age 75, left hemisphere 185.2
Substantia nigra
nTPM: 305.8
2241 Male, age 72, unknown 393.9
1916 Female, age 42, unknown 388.2
1851 Male, age 51, unknown 347.8
1941 Male, age 53, unknown 323.9
2665 Male, age 74, both hemispheres 314.9
1889 Female, age 72, unknown 288.5
2409 Female, age 72, unknown 284.1
2699 Male, age 18, unknown 253.0
2590 Female, age 75, unknown 246.1
2583 Male, age 75, right hemisphere 217.2
Superior colliculus
nTPM: 210.6
2587 Male, age 74, left hemisphere 245.5
1895 Male, age 76, right hemisphere 230.3
2261 Male, age 18, unknown 229.8
1839 Male, age 51, unknown 229.4
1796 Male, age 53, unknown 227.2
2087 Female, age 72, unknown 227.2
2668 Female, age 75, unknown 224.5
2664 Male, age 75, both hemispheres 169.1
1995 Male, age 72, unknown 168.4
1913 Female, age 42, unknown 154.7
Ventral tegmental area
nTPM: 300.1
1915 Female, age 42, unknown 352.7
2410 Female, age 72, unknown 307.3
2218 Male, age 76, both hemispheres 303.2
1942 Male, age 51, unknown 297.8
2021 Male, age 53, unknown 270.2
2223 Female, age 72, unknown 269.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 272.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 272.7
Samples: 183

Max nTPM: 916.9
Min nTPM: 93.5
Std nTPM: 106.7
Median nTPM: 247.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 916.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 656.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 571.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 569.8
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 567.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 551.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 493.6
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 471.5
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 468.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 454.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 450.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 198.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 198.4
FF:10158-103A5 76 years, female 198.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 108.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 98.8
Samples: 4

Max nTPM: 135.9
Min nTPM: 68.3
Sample A Female 135.9
Sample B Female 112.4
Sample C Male 78.6
Sample D Male 68.3
Midbrain
nTPM: 88.6
Samples: 4

Max nTPM: 138.1
Min nTPM: 52.5
Sample A Female 138.1
Sample B Female 70.3
Sample C Male 93.5
Sample D Male 52.5
Periaqueductal gray
nTPM: 104.6
Samples: 3

Max nTPM: 116.5
Min nTPM: 88.1
Sample B Female 88.1
Sample C Male 116.5
Sample D Male 109.2
Superior colliculi
nTPM: 108.6
Samples: 4

Max nTPM: 147.6
Min nTPM: 68.8
Sample A Female 100.8
Sample B Female 147.6
Sample C Male 117.2
Sample D Male 68.8

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