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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:152.1 nTPM
HPA Brain:60.4 nTPM
GTEx:152.1 nTPM
FANTOM5:112.0 Scaled Tags Per Million
Pig:89.1 nTPM
Mouse:221.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.4
Sample id Sample description nTPM
Amygdala
nTPM: 60.4
2814 Male, age 76, right hemisphere 73.6
2695 Female, age 67, right hemisphere 70.3
2514 Male, age 75, right hemisphere 58.7
2517 Female, age 94, left hemisphere 50.6
1987 Female, age 91, left hemisphere 48.5
Basal amygdala
nTPM: 46.4
2609 Male, age 75, right hemisphere 63.6
2110 Male, age 80, left hemisphere 50.8
1955 Male, age 76, both hemispheres 45.5
2243 Female, age 91, right hemisphere 44.5
2685 Female, age 94, left hemisphere 38.0
2827 Female, age 67, right hemisphere 35.9
Central amygdala
nTPM: 54.9
1905 Male, age 76, both hemispheres 65.6
2826 Female, age 94, left hemisphere 64.9
2515 Male, age 75, right hemisphere 54.9
2239 Male, age 80, left hemisphere 47.1
2701 Female, age 91, right hemisphere 42.1
Corticomedial amygdala
nTPM: 49.0
2428 Male, age 75, right hemisphere 61.8
2829 Male, age 80, left hemisphere 54.5
2429 Female, age 94, left hemisphere 52.5
2240 Male, age 76, both hemispheres 47.1
2242 Female, age 91, right hemisphere 42.7
2535 Female, age 67, right hemisphere 35.6
Lateral amygdala
nTPM: 52.2
2516 Male, age 75, right hemisphere 71.3
1883 Male, age 76, both hemispheres 68.4
2534 Female, age 94, left hemisphere 53.1
2830 Female, age 67, right hemisphere 46.4
2256 Male, age 80, left hemisphere 37.8
2255 Female, age 91, right hemisphere 35.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 152.1
Samples: 181

Max nTPM: 320.6
Min nTPM: 98.5
Std nTPM: 32.5
Median nTPM: 146.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 320.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 269.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 260.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 244.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 230.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 224.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 220.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 215.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 214.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 209.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 208.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 207.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 206.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 204.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 200.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 199.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 197.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 196.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 192.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 188.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 186.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 184.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 183.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 182.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 181.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 180.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 178.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 177.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 176.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 176.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 176.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 175.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 172.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 172.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 171.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 169.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 169.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 168.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 167.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 167.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 167.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 167.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 166.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 166.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 166.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 165.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 165.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 165.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 165.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 164.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 163.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 163.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 162.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 162.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 161.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 160.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 160.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 160.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 159.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 159.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 159.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 159.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 159.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 158.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 158.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 158.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 157.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 157.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 157.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 154.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 154.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 154.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 154.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 153.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 153.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 153.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 153.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 152.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 152.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 151.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 151.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 151.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 150.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 150.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 149.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 148.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 148.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 147.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 147.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 147.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 146.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 146.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 146.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 146.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 145.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 145.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 144.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 144.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 143.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 142.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 142.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 142.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 142.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 141.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 141.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 141.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 140.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 139.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 139.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 139.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 139.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 138.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 138.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 138.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 138.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 137.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 136.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 136.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 136.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 136.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 136.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 136.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 134.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 134.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 134.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 134.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 133.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 133.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 133.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 132.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 132.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 132.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 131.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 131.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 129.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 129.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 129.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 129.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 128.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 128.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 128.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 127.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 127.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 127.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 127.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 125.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 125.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 124.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 124.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 123.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 123.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 122.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 121.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 121.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 121.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 119.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 118.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 117.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 117.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 117.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 117.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 115.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 115.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 114.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 114.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 114.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 113.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 112.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 111.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 111.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 110.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 110.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 108.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 108.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 107.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 105.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 104.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 100.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 98.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

112.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 112.0
FF:10151-102I7 76 years, female 112.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.1
Pig sample Sample description nTPM
Amygdala
nTPM: 89.1
Samples: 4

Max nTPM: 110.3
Min nTPM: 69.5
Sample A Female 110.3
Sample B Female 92.8
Sample C Male 83.8
Sample D Male 69.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

221.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 221.2
Samples: 4

Max nTPM: 228.7
Min nTPM: 213.5
Sample A Male 228.7
Sample B Male 220.4
Sample C Female 222.2
Sample D Female 213.5

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