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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
Tissue methods
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Cells in glomeruli: Not detected
Cells in tubules: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1159.2 nTPM
HPA:906.4 nTPM
GTEx:1159.2 nTPM
FANTOM5:49.5 Scaled Tags Per Million
KIDNEY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA068418
Cells in glomeruli Not detected
Cells in tubules Low



KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

906.4
overview
Female, age 58
Kidney sample 55
nTPM: 771.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 774.9
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 510.6
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 813.5
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 1071.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 896
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 1519.6
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 691.3
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 1109.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1159.2
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 1000.4
Samples: 104

Max nTPM: 1793.9
Min nTPM: 599.2
Std nTPM: 286.6
Median nTPM: 952.4
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 1793.9
GTEX-WL46-1926-SM-GNIN6 50-59 years, male 1777.8
GTEX-15DCD-1926-SM-HAV33 70-79 years, female 1769.6
GTEX-1JJE9-1026-SM-HL9TH 70-79 years, male 1735.7
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 1650.8
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 1641.4
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 1623.2
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 1601.3
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 1575.6
GTEX-1O9I2-1926-SM-F2TBQ 50-59 years, male 1462.5
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 1393.3
GTEX-1117F-2126-SM-GIN9G 60-69 years, female 1339.7
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 1332.9
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 1271.3
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 1271.3
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 1256.2
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 1251.3
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 1234.3
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 1233.5
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 1233.3
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 1224.7
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 1221.6
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 1201.5
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 1181.6
GTEX-14PJ2-1826-SM-HL9UB 50-59 years, male 1180.8
GTEX-1ICLY-2026-SM-GA913 50-59 years, male 1176.9
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 1140.1
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 1139.5
GTEX-13FHP-2126-SM-GIN8J 50-59 years, male 1118.7
GTEX-16XZY-1026-SM-HAV39 70-79 years, male 1106.4
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 1098.1
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 1065.0
GTEX-1RQEC-2426-SM-F2I1J 60-69 years, male 1051.7
GTEX-O5YV-1226-SM-EV795 60-69 years, female 1042.1
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 1038.6
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 1025.6
GTEX-13112-2126-SM-5GCO4 50-59 years, male 1019.5
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 1019.4
GTEX-1QAET-2126-SM-F2TBS 50-59 years, male 1018.3
GTEX-1LH75-1326-SM-F2I1R 50-59 years, female 1016.5
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 1014.9
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 1011.4
GTEX-1HCVE-2126-SM-HL9UO 50-59 years, male 1011.0
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 1005.6
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 1005.1
GTEX-14C39-2126-SM-664OH 40-49 years, male 1002.5
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 997.0
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 991.3
GTEX-14JG1-2326-SM-HAUZ5 40-49 years, male 986.1
GTEX-16XZZ-2226-SM-HAV34 60-69 years, male 966.3
GTEX-ZXG5-2026-SM-HAUZV 60-69 years, male 965.3
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 956.2
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 948.5
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 943.8
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 932.7
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 912.8
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 912.4
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 897.4
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 889.3
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 873.7
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 861.5
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 850.6
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 844.7
GTEX-W5X1-1626-SM-H7OGO 40-49 years, female 839.0
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 838.3
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 835.2
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 831.9
GTEX-QDVN-1726-SM-HL9TO 50-59 years, male 829.0
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 826.9
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 820.1
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 819.7
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 817.8
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 814.4
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 800.6
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 793.2
GTEX-16Z82-2826-SM-HAUZZ 60-69 years, male 791.0
GTEX-13O3O-1726-SM-GJ3RL 60-69 years, female 790.2
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 790.0
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 787.8
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 784.1
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 776.9
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 774.8
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 774.4
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 771.3
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 767.8
GTEX-RN64-1626-SM-48FD7 50-59 years, male 755.7
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 748.7
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 744.8
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 738.9
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 724.0
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 723.7
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 713.8
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 712.5
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 698.7
GTEX-12696-0926-SM-5FQTV 60-69 years, male 688.1
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 681.8
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 674.8
GTEX-NFK9-1826-SM-HL9T3 40-49 years, male 662.3
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 660.6
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 657.6
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 632.8
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 630.3
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 605.4
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 599.2
Show allShow less
Kidney - Medulla
Average nTPM: 1159.2
Samples: 11

Max nTPM: 2561.3
Min nTPM: 625.5
Std nTPM: 549.7
Median nTPM: 1000.2
GTEX-N7MS-1526-SM-HAUZP 60-69 years, male 2561.3
GTEX-QEG5-2026-SM-H6Q6I 20-29 years, male 1836.0
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 1354.9
GTEX-T6MN-1926-SM-GOQYD 50-59 years, male 1097.1
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 1055.5
GTEX-SIU8-1926-SM-H7OG4 50-59 years, male 1000.2
GTEX-QEG4-1526-SM-GPRWK 30-39 years, male 928.2
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 858.0
GTEX-P4QS-1226-SM-HPAG8 60-69 years, male 751.3
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 682.7
GTEX-S33H-1526-SM-GQ1CB 30-39 years, male 625.5
Show allShow less

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 49.5
FF:10017-101C8 60,62,63 years, female 49.5

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