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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:492.8 nTPM
GTEx:492.8 nTPM
FANTOM5:18.1 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

492.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 492.8
Samples: 105

Max nTPM: 669.4
Min nTPM: 365.5
Std nTPM: 64.5
Median nTPM:
379_1 60 years, male 669.4
495_1 57 years, female 629.2
307_1 66 years, female 617.6
35_1 74 years, female 612.4
321_1 62 years, female 607.4
384_1 83 years, male 603.8
375_1 74 years, female 590.8
218_1 71 years, female 590.7
389_1 86 years, female 589.8
120_1 70 years, female 589.2
315_1 62 years, female 586.5
153_1 70 years, female 581.1
414_1 84 years, female 579.9
308_1 70 years, female 579.2
447_1 81 years, male 577.6
491_1 89 years, female 574.2
237_1 82 years, male 552.6
526_1 61 years, male 550.3
376_1 75 years, female 549.2
119_1 70 years, female 547.1
189_1 76 years, male 545.6
17_1 71 years, male 543.3
145_1 84 years, male 541.4
347_1 72 years, male 538.5
139_1 64 years, female 533.8
126_1 63 years, male 532.3
452_1 88 years, female 532.1
246_1 77 years, male 531.9
311_1 78 years, male 531.3
2_1 77 years, female 530.0
254_1 77 years, female 529.7
4_1 88 years, female 528.0
396_1 62 years, male 526.8
355_1 70 years, female 525.3
415_1 77 years, female 524.7
322_1 76 years, male 522.3
41_1 94 years, female 519.7
265_1 87 years, male 518.9
386_1 76 years, male 516.1
348_1 84 years, male 515.6
6_1 73 years, female 511.7
162_1 79 years, female 509.5
229_1 69 years, female 507.0
377_1 82 years, female 506.4
117_1 61 years, male 506.2
490_1 67 years, female 504.2
394_1 75 years, female 502.0
173_1 67 years, male 500.4
413_1 59 years, female 497.2
137_1 83 years, male 495.9
317_1 60 years, male 493.2
99_1 64 years, male 492.9
405_1 91 years, male 492.2
243_1 75 years, male 491.2
404_1 82 years, female 488.5
266_1 85 years, male 486.5
142_1 61 years, female 483.0
518_1 75 years, female 479.8
319_1 81 years, male 476.2
288_1 66 years, female 475.3
501_1 88 years, male 474.4
349_1 83 years, male 472.5
109_1 81 years, female 470.7
466_1 57 years, female 469.4
499_1 55 years, female 469.4
468_1 89 years, male 467.0
42_1 85 years, male 466.1
217_1 76 years, male 464.8
320_1 89 years, female 464.8
18_1 88 years, male 463.4
32_1 67 years, male 463.4
354_1 81 years, female 463.1
335_1 73 years, female 462.7
314_1 67 years, male 453.6
316_1 62 years, male 453.4
351_1 91 years, male 449.6
177_1 74 years, male 447.1
89_1 63 years, male 447.0
324_1 76 years, male 447.0
115_1 83 years, male 446.9
313_1 79 years, female 444.4
251_1 78 years, male 441.5
425_1 59 years, female 440.2
172_1 72 years, female 437.7
264_1 73 years, female 435.5
291_1 76 years, male 433.8
81_1 67 years, male 429.0
353_1 82 years, female 428.3
295_1 61 years, female 426.5
350_1 84 years, female 423.1
318_1 68 years, male 420.9
352_1 62 years, male 420.6
406_1 79 years, male 414.7
480_1 63 years, male 412.6
286_1 68 years, female 411.9
503_1 68 years, male 406.8
9_1 66 years, female 397.3
517_1 88 years, male 397.2
149_1 88 years, male 387.1
506_1 65 years, male 387.1
43_1 64 years, female 381.5
163_1 78 years, male 374.0
356_1 87 years, female 373.6
293_1 68 years, female 372.6
292_1 71 years, male 365.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 18.1
FF:10030-101E3 24-65 years, mixed 18.1

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