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  • YPEL3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:201.4 nTPM
HPA Brain:193.2 nTPM
GTEx:201.4 nTPM
FANTOM5:298.6 Scaled Tags Per Million
Pig:97.0 nTPM
Mouse:194.5 nTPM
Allen mouse:3.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.2
Sample id Sample description nTPM
Amygdala
nTPM: 167.6
2814 Male, age 76, right hemisphere 228.4
2517 Female, age 94, left hemisphere 172.0
2514 Male, age 75, right hemisphere 147.3
2695 Female, age 67, right hemisphere 145.6
1987 Female, age 91, left hemisphere 144.9
Basal amygdala
nTPM: 188.2
2685 Female, age 94, left hemisphere 211.9
1955 Male, age 76, both hemispheres 205.0
2243 Female, age 91, right hemisphere 195.8
2110 Male, age 80, left hemisphere 175.8
2609 Male, age 75, right hemisphere 174.9
2827 Female, age 67, right hemisphere 165.5
Central amygdala
nTPM: 193.2
2826 Female, age 94, left hemisphere 253.9
1905 Male, age 76, both hemispheres 213.4
2239 Male, age 80, left hemisphere 184.7
2701 Female, age 91, right hemisphere 169.2
2515 Male, age 75, right hemisphere 144.7
Corticomedial amygdala
nTPM: 173.2
2829 Male, age 80, left hemisphere 190.3
2535 Female, age 67, right hemisphere 183.5
2240 Male, age 76, both hemispheres 182.5
2242 Female, age 91, right hemisphere 171.3
2429 Female, age 94, left hemisphere 165.6
2428 Male, age 75, right hemisphere 146.0
Lateral amygdala
nTPM: 190.5
2534 Female, age 94, left hemisphere 266.3
1883 Male, age 76, both hemispheres 197.1
2256 Male, age 80, left hemisphere 192.1
2255 Female, age 91, right hemisphere 190.3
2516 Male, age 75, right hemisphere 160.4
2830 Female, age 67, right hemisphere 136.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 201.4
Samples: 181

Max nTPM: 411.3
Min nTPM: 78.2
Std nTPM: 58.3
Median nTPM: 195.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 411.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 387.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 364.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 347.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 339.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 338.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 322.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 314.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 303.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 303.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 302.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 294.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 293.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 291.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 286.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 282.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 280.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 280.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 279.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 274.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 274.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 273.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 272.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 272.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 266.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 255.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 251.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 249.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 249.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 248.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 248.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 247.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 247.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 246.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 244.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 242.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 242.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 240.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 239.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 239.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 238.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 238.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 237.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 236.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 235.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 234.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 233.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 232.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 231.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 231.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 231.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 231.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 230.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 229.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 227.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 227.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 227.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 226.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 222.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 221.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 220.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 219.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 219.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 219.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 218.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 217.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 214.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 213.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 213.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 212.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 211.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 211.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 211.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 208.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 207.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 205.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 205.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 205.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 204.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 201.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 200.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 200.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 199.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 198.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 198.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 197.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 197.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 196.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 195.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 195.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 195.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 195.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 193.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 193.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 192.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 191.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 190.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 190.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 189.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 189.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 188.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 188.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 187.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 187.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 187.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 186.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 186.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 186.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 185.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 185.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 183.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 182.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 182.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 180.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 179.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 179.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 177.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 174.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 173.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 172.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 171.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 171.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 171.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 170.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 170.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 169.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 168.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 168.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 167.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 167.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 164.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 163.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 162.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 162.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 161.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 161.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 160.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 158.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 158.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 157.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 154.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 153.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 152.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 152.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 151.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 151.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 150.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 149.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 149.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 148.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 145.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 144.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 143.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 142.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 141.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 141.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 140.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 139.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 139.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 137.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 136.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 136.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 135.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 134.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 134.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 129.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 128.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 125.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 124.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 123.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 122.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 114.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 113.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 112.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 111.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 104.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 98.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 97.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 90.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 90.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 78.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

298.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 298.6
FF:10151-102I7 76 years, female 298.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.0
Pig sample Sample description nTPM
Amygdala
nTPM: 97.0
Samples: 4

Max nTPM: 131.0
Min nTPM: 81.6
Sample A Female 131.0
Sample B Female 85.6
Sample C Male 81.6
Sample D Male 89.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 194.5
Samples: 4

Max nTPM: 224.3
Min nTPM: 167.7
Sample A Male 197.0
Sample B Male 189.0
Sample C Female 224.3
Sample D Female 167.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.4
75214942 Antisense, RP_060427_01_A10, Mouse strain C57BL/6J (56 days, male) 3.4

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