On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
123.5
nTPM
HPA Brain:
169.8
nTPM
GTEx:
123.5
nTPM
FANTOM5:
232.4
Scaled Tags Per Million
Macaque:
249.9
nTPM
Mouse:
194.4
nTPM
Rat:
182.0
nTPM
Pig:
169.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
169.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 157.3
2586
Male, age 75, left hemisphere
200.5
2219
Male, age 76, both hemispheres
183.0
1827
Male, age 72, unknown
175.0
2828
Female, age 72, unknown
165.0
2666
Male, age 74, left hemisphere
151.3
1870
Female, age 42, unknown
143.2
1830
Male, age 51, unknown
141.2
2019
Male, age 18, unknown
138.7
1833
Male, age 53, unknown
138.5
2411
Female, age 72, unknown
136.5
Dorsal raphe nucleus nTPM: 120.1
2047
Male, age 72, unknown
128.0
2750
Male, age 76, both hemispheres
127.4
2298
Female, age 72, unknown
122.0
1828
Male, age 53, unknown
115.9
2016
Female, age 72, unknown
107.2
Inferior colliculus nTPM: 158.8
2849
Male, age 72, unknown
188.0
1848
Female, age 42, unknown
173.2
2097
Female, age 72, unknown
143.8
1890
Male, age 53, unknown
130.2
Median raphe nucleus nTPM: 132.6
2220
Male, age 76, midline
132.6
Periaquaductal grey, anterior nTPM: 169.3
1947
Male, age 18, unknown
174.1
2502
Female, age 75, unknown
171.1
1795
Male, age 51, unknown
162.7
Periaquaductal grey, dorsal nTPM: 129.5
1840
Male, age 53, unknown
143.8
2464
Female, age 72, unknown
133.1
2850
Male, age 76, both hemispheres
121.0
1831
Male, age 72, unknown
120.3
Periaquaductal grey, lateral nTPM: 128.5
2053
Male, age 18, unknown
135.4
2140
Male, age 76, both hemispheres
126.2
2272
Male, age 74, both hemispheres
123.9
Pretectal area nTPM: 169.8
2007
Male, age 72, unknown
215.3
1816
Male, age 51, unknown
211.2
1817
Female, age 42, unknown
201.0
1944
Female, age 72, unknown
190.6
2667
Female, age 75, unknown
184.6
1815
Male, age 53, unknown
182.3
2407
Male, age 75, both hemispheres
152.3
2825
Male, age 18, unknown
148.8
2316
Male, age 76, right hemisphere
133.1
2224
Female, age 72, unknown
127.0
2273
Male, age 74, both hemispheres
121.5
Red nucleus nTPM: 138.2
2785
Male, age 18, unknown
164.1
2584
Male, age 75, left hemisphere
156.8
2588
Male, age 74, left hemisphere
152.0
2503
Female, age 72, unknown
139.3
1821
Female, age 72, unknown
139.0
2769
Male, age 72, unknown
137.0
1865
Male, age 51, unknown
136.8
2227
Male, age 72, unknown
131.7
1904
Male, age 53, unknown
129.9
1954
Female, age 42, unknown
127.6
2725
Female, age 75, unknown
123.8
2823
Male, age 76, right hemisphere
120.9
Substantia nigra nTPM: 148.6
1941
Male, age 53, unknown
194.6
2665
Male, age 74, both hemispheres
190.9
1889
Female, age 72, unknown
181.1
2583
Male, age 75, right hemisphere
144.2
1851
Male, age 51, unknown
143.3
1916
Female, age 42, unknown
135.3
2699
Male, age 18, unknown
134.2
2409
Female, age 72, unknown
133.8
2590
Female, age 75, unknown
125.9
2241
Male, age 72, unknown
103.1
Superior colliculus nTPM: 162.1
2668
Female, age 75, unknown
185.9
1796
Male, age 53, unknown
175.5
2261
Male, age 18, unknown
171.0
1895
Male, age 76, right hemisphere
166.9
2664
Male, age 75, both hemispheres
166.4
2087
Female, age 72, unknown
163.8
1839
Male, age 51, unknown
156.3
1913
Female, age 42, unknown
152.5
2587
Male, age 74, left hemisphere
144.2
1995
Male, age 72, unknown
139.0
Ventral tegmental area nTPM: 130.0
2410
Female, age 72, unknown
150.0
1915
Female, age 42, unknown
134.4
2218
Male, age 76, both hemispheres
134.2
2223
Female, age 72, unknown
128.1
1942
Male, age 51, unknown
124.1
2021
Male, age 53, unknown
109.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
123.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 123.5
Samples: 183
Max nTPM: 351.8
Min nTPM: 20.7
Std nTPM: 40.6
Median nTPM: 118.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
351.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
262.6
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
242.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
208.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
204.8
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
203.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
200.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
195.5
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
188.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
185.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
183.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
182.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
182.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
179.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
178.6
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
177.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
177.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
176.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
176.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
172.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
172.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
172.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
171.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
171.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
167.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
162.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
161.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
159.2
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
158.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
158.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
157.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
154.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
153.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
153.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
152.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
151.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
150.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
150.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
149.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
148.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
148.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
147.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
147.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
147.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
146.4
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
144.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
144.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
144.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
142.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
141.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
141.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
140.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
139.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
139.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
137.8
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
137.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
135.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
134.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
133.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
133.2
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
132.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
132.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
130.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
130.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
130.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
129.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
128.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
128.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
128.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
128.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
127.6
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
126.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
126.0
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
125.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
123.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
122.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
121.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
121.7
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
121.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
121.1
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
121.0
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
120.9
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
120.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
119.5
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
119.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
119.4
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
119.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
119.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
119.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
119.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
118.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
118.3
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
118.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
117.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
117.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
117.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
115.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
115.7
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
115.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
115.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
115.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
115.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
115.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
114.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
114.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
113.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
113.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
113.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
112.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
112.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
112.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
112.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
110.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
110.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
110.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
109.9
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
109.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
108.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
108.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
108.0
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
107.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
107.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
106.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
105.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
105.8
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
105.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
105.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
105.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
105.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
104.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
104.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
104.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
103.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
103.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
102.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
100.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
100.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
99.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
97.5
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
97.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
95.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
95.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
94.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
93.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
93.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
92.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
92.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
92.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
91.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
90.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
89.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
88.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
88.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
88.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
87.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
86.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
86.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
85.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
84.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
84.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
83.9
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
83.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
82.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
81.9
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
80.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
80.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
80.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
76.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
74.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
74.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
71.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
71.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
69.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
66.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
65.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
62.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
60.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
59.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
57.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
54.9
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
43.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
42.7
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
20.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
249.9
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 135.2
Samples: 1
Max nTPM: 135.2
Min nTPM: 135.2
Sample A
135.2
Midbrain nTPM: 176.2
Samples: 1
Max nTPM: 176.2
Min nTPM: 176.2
Sample A
176.2
Superior colliculi nTPM: 249.9
Samples: 1
Max nTPM: 249.9
Min nTPM: 249.9
Sample A
249.9
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
169.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 132.2
Samples: 3
Max nTPM: 165.2
Min nTPM: 97.6
Sample A
Female
165.2
Sample B
Female
97.6
Sample C
Male
133.8
Midbrain nTPM: 166.1
Samples: 3
Max nTPM: 219.3
Min nTPM: 108.9
Sample B
Female
108.9
Sample C
Male
219.3
Sample D
Male
170.0
Periaqueductal gray nTPM: 122.4
Samples: 3
Max nTPM: 136.0
Min nTPM: 108.5
Sample B
Female
108.5
Sample C
Male
136.0
Sample D
Male
122.8
Superior colliculi nTPM: 169.2
Samples: 4
Max nTPM: 202.1
Min nTPM: 120.4
Sample A
Female
181.2
Sample B
Female
120.4
Sample C
Male
202.1
Sample D
Male
173.2
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
194.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 194.4
Samples: 4
Max nTPM: 213.0
Min nTPM: 184.7
Sample A
184.7
Sample B
213.0
Sample C
192.7
Sample D
187.0
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
182.0
Rat sample
Sample description
nTPM
Midbrain nTPM: 182.0
Samples: 4
Max nTPM: 193.0
Min nTPM: 157.3
Sample A
187.3
Sample A
193.0
Sample A
190.5
Sample A
157.3
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The Human Protein Atlas project is funded
