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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:886.6 nTPM
HPA Brain:939.9 nTPM
GTEx:886.6 nTPM
FANTOM5:1984.2 Scaled Tags Per Million
Pig:1692.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

939.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 707.3
1981 Female, age 72, midline 1072.4
2048 Male, age 55, midline 746.4
2816 Male, age 47, midline 701.2
2194 Female, age 79, both hemispheres 665.8
2565 Male, age 75, midline 350.7
Cervical spinal cord, dorsal horn
nTPM: 939.9
2296 Male, age 66, both hemispheres 1824.3
2173 Female, age 72, unknown 1549.6
2069 Male, age 47, both hemispheres 934.9
1877 Male, age 55, unknown 674.1
2297 Male, age 75, both hemispheres 350.1
2721 Male, age 90, both hemispheres 306.4
Cervical spinal cord, ventral horn
nTPM: 781.1
2098 Female, age 72, unknown 1063.8
2068 Male, age 55, unknown 1029.7
2809 Male, age 90, both hemispheres 693.1
2820 Female, age 79, both hemispheres 671.2
2480 Male, age 75, both hemispheres 618.3
2295 Male, age 66, both hemispheres 610.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

886.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 886.6
Samples: 204

Max nTPM: 2688.1
Min nTPM: 72.8
Std nTPM: 451.6
Median nTPM: 811.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2688.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 2183.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 2156.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1941.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1857.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1807.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1802.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1796.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1777.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1772.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1749.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1728.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1662.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1620.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1618.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1596.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1570.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1531.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1530.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1519.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1514.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1505.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1489.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1484.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 1473.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1472.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1428.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1387.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 1376.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1367.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1357.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1351.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1348.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1339.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1327.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1320.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1316.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1313.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1312.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1274.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1273.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1267.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1266.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1256.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1256.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1249.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1235.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1216.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1191.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1182.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1169.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1167.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1162.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1158.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1133.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1122.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1109.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1107.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1105.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1089.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1089.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1068.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1059.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1039.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1035.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1015.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1015.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1010.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1008.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1000.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 997.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 981.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 980.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 980.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 979.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 962.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 958.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 950.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 945.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 940.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 928.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 921.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 912.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 911.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 911.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 910.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 904.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 893.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 891.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 890.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 880.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 879.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 875.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 875.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 858.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 857.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 841.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 835.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 832.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 827.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 813.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 812.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 809.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 798.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 789.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 787.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 785.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 780.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 779.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 775.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 773.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 769.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 767.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 760.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 756.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 741.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 736.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 735.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 729.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 726.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 726.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 725.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 719.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 716.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 714.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 703.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 699.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 687.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 682.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 677.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 672.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 665.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 660.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 658.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 657.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 656.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 652.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 650.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 640.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 638.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 631.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 630.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 625.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 623.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 617.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 598.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 564.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 562.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 553.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 552.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 549.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 546.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 545.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 524.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 523.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 520.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 513.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 511.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 510.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 490.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 480.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 479.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 476.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 469.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 467.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 465.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 464.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 457.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 457.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 454.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 449.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 445.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 440.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 435.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 433.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 432.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 419.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 417.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 405.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 398.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 384.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 369.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 368.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 365.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 355.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 355.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 332.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 326.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 297.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 296.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 286.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 285.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 282.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 279.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 276.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 263.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 259.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 253.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 252.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 191.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 186.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 181.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 109.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 72.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1984.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1984.2
FF:10181-103D1 60 years, female 2470.1
FF:10159-103A6 76 years, female 1498.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1692.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1305.9
Samples: 4

Max nTPM: 1469.9
Min nTPM: 1128.1
Sample A Female 1469.9
Sample B Female 1359.4
Sample C Male 1128.1
Sample D Male 1266.3
Ventral spinal cord
nTPM: 1692.9
Samples: 4

Max nTPM: 2043.8
Min nTPM: 1261.3
Sample A Female 1840.7
Sample B Female 1625.9
Sample C Male 1261.3
Sample D Male 2043.8

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