On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
886.6
nTPM
HPA Brain:
1383.4
nTPM
GTEx:
886.6
nTPM
FANTOM5:
1984.2
Scaled Tags Per Million
Macaque:
1194.4
nTPM
Mouse:
840.6
nTPM
Pig:
1700.7
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
54564
Sample
Intensity
Spinal cord_01
116712
Spinal cord_02
75851
Spinal cord_03
52365
Spinal cord_04
36402
Spinal cord_05
27261
Spinal cord_06
127938
Spinal cord_07
53922
Spinal cord_08
55206
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1383.4
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 1236.6
2734
Male, age 80, both hemispheres
1411.3
2193
Male, age 75, both hemispheres
1253.1
2818
Female, age 79, both hemispheres
1160.1
2819
Male, age 47, both hemispheres
1121.8
Cervical spinal cord, central gray nTPM: 710.4
1981
Female, age 72, midline
1076.1
2048
Male, age 55, midline
749.6
2816
Male, age 47, midline
704.7
2194
Female, age 79, both hemispheres
668.9
2565
Male, age 75, midline
352.8
Cervical spinal cord, dorsal horn nTPM: 943.9
2296
Male, age 66, both hemispheres
1832.1
2173
Female, age 72, unknown
1554.6
2069
Male, age 47, both hemispheres
939.6
1877
Male, age 55, unknown
676.8
2297
Male, age 75, both hemispheres
352.3
2721
Male, age 90, both hemispheres
307.9
Cervical spinal cord, ventral horn nTPM: 784.7
2098
Female, age 72, unknown
1067.7
2068
Male, age 55, unknown
1033.7
2809
Male, age 90, both hemispheres
696.8
2820
Female, age 79, both hemispheres
674.1
2480
Male, age 75, both hemispheres
622.4
2295
Male, age 66, both hemispheres
613.5
Dorsal funiculus (white matter) nTPM: 1383.4
2810
Male, age 90, both hemispheres
1855.0
2128
Male, age 75, both hemispheres
1605.1
2812
Male, age 66, both hemispheres
1170.6
2817
Male, age 47, both hemispheres
1146.5
2064
Female, age 79, both hemispheres
1139.8
Lateral funiculus (white matter) nTPM: 1383.3
2099
Male, age 90, both hemispheres
2475.6
2094
Female, age 79, both hemispheres
1256.3
2192
Male, age 75, both hemispheres
1051.5
2294
Male, age 66, both hemispheres
749.9
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
886.6
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 886.6
Samples: 204
Max nTPM: 2688.1
Min nTPM: 72.8
Std nTPM: 451.6
Median nTPM: 811.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
2688.1
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
2183.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
2156.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
1941.9
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
1857.0
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
1807.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
1802.8
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
1796.3
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
1777.1
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
1772.2
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
1749.1
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
1728.3
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
1662.3
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
1620.9
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
1618.2
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
1596.5
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
1570.6
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
1531.9
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
1530.1
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
1519.3
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
1514.5
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
1505.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1489.2
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
1484.8
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
1473.0
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
1472.1
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
1428.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
1387.6
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
1376.8
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
1367.7
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
1357.2
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
1351.6
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
1348.1
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
1339.7
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
1327.1
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1320.0
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
1316.7
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1313.0
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
1312.9
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
1274.8
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
1273.6
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
1267.4
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
1266.5
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
1256.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
1256.5
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
1249.8
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
1235.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
1216.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
1191.0
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
1182.6
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
1169.7
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
1167.8
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
1162.6
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1158.4
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
1133.4
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
1122.4
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1109.2
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
1107.4
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
1105.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
1089.5
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
1089.4
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
1068.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
1059.9
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
1039.4
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
1035.9
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
1015.9
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
1015.5
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1010.0
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
1008.9
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
1000.0
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
997.6
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
981.7
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
980.7
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
980.0
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
979.3
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
962.3
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
958.4
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
950.1
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
945.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
940.4
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
928.6
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
921.3
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
912.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
911.9
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
911.0
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
910.7
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
904.3
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
893.0
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
891.2
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
890.3
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
880.0
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
879.9
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
875.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
875.6
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
858.9
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
857.5
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
841.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
835.1
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
832.8
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
827.3
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
813.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
812.8
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
809.3
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
798.2
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
789.0
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
787.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
785.4
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
780.0
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
779.4
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
775.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
773.4
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
769.0
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
767.5
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
760.6
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
756.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
741.2
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
736.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
735.7
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
729.2
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
726.5
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
726.3
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
725.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
719.6
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
716.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
714.4
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
703.3
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
699.4
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
687.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
682.1
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
677.8
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
672.4
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
665.8
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
660.5
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
658.4
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
657.1
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
656.5
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
652.0
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
650.5
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
640.7
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
638.9
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
631.4
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
630.9
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
625.0
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
623.9
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
617.0
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
598.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
564.7
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
562.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
553.8
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
552.3
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
549.4
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
546.9
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
545.8
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
524.2
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
523.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
520.3
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
513.5
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
511.0
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
510.7
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
490.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
480.6
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
479.2
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
476.5
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
469.0
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
467.5
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
465.7
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
464.3
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
457.9
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
457.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
454.5
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
449.4
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
445.7
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
440.3
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
435.2
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
433.5
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
432.8
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
419.8
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
417.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
405.5
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
398.2
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
384.2
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
369.3
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
368.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
365.2
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
355.9
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
355.3
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
332.5
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
326.2
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
297.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
296.0
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
286.1
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
285.1
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
282.9
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
279.7
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
276.4
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
263.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
259.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
253.3
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
252.5
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
191.4
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
186.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
181.4
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
109.2
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
72.8
Show allShow less
SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1194.4
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 778.7
Samples: 2
Max nTPM: 943.2
Min nTPM: 614.2
Sample A
614.2
Sample B
943.2
Ventral spinal cord nTPM: 1194.4
Samples: 1
Max nTPM: 1194.4
Min nTPM: 1194.4
Sample A
1194.4
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1700.7
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 1311.6
Samples: 4
Max nTPM: 1475.0
Min nTPM: 1133.8
Sample A
Female
1475.0
Sample B
Female
1366.0
Sample C
Male
1133.8
Sample D
Male
1271.7
Ventral spinal cord nTPM: 1700.7
Samples: 4
Max nTPM: 2052.8
Min nTPM: 1267.4
Sample A
Female
1848.0
Sample B
Female
1634.7
Sample C
Male
1267.4
Sample D
Male
2052.8
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
840.6
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 840.6
Samples: 4
Max nTPM: 888.1
Min nTPM: 799.8
Sample A
888.1
Sample B
807.8
Sample C
799.8
Sample D
866.8
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
