On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
116.3
nTPM
HPA Brain:
87.2
nTPM
GTEx:
116.3
nTPM
FANTOM5:
75.3
Scaled Tags Per Million
Macaque:
37.4
nTPM
Mouse:
77.0
nTPM
Rat:
28.5
nTPM
Pig:
86.9
nTPM
AMYGDALA - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - AMYGDALA, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RXFP1+ ...
c-2
Excitatory (VGLUT1/2)
c-3
Inhibitory (GAD1/2) CXCL14+...
c-4
Excitatory (VGLUT1/2)
c-5
Excitatory (VGLUT1/2)
c-6
Inhibitory (GAD1/2) CXCL14+...
c-7
Excitatory (VGLUT1/2)
c-8
Excitatory (VGLUT1/2)
c-9
Excitatory (VGLUT1)
c-10
Excitatory (VGLUT1)
c-11
Inhibitory (GAD1/2)
c-12
Inhibitory (GAD1/2) SST+ LH...
c-13
Excitatory (VGLUT2)
c-14
Inhibitory (GAD1/2) KIT+ LA...
c-15
Inhibitory (GAD1/2) TAC1+ L...
c-16
Excitatory (VGLUT1/2)
c-17
Inhibitory (GAD1/2) TSHZ1+
c-18
Excitatory (VGLUT1/2)
c-19
Inhibitory (GAD1/2) CXCL14+...
c-20
Excitatory (VGLUT1/2)
c-21
Excitatory (VGLUT1/2)
c-22
Excitatory (VGLUT1)
c-23
Unassigned
c-24
Inhibitory (GAD1/2) PENK+ D...
c-25
Excitatory (VGLUT1/2)
c-26
Inhibitory (GAD1/2) CXCL14+...
c-27
Inhibitory (GAD1/2) LHX6+ E...
c-28
Excitatory (VGLUT1/2) SATB2...
c-29
Inhibitory (GAD1) LHX6+
c-30
Excitatory (VGLUT1/2)
c-31
Excitatory (VGLUT1/2)
c-32
Excitatory (VGLUT1)
c-33
Inhibitory (GAD1/2) TAC1+ P...
c-34
Excitatory (VGLUT1/2)
c-35
Excitatory (VGLUT1/2) ETV1+...
c-36
Inhibitory (GAD1/2) PENK+
c-37
Excitatory (VGLUT1/2)
c-38
Excitatory (VGLUT1) FOXP2+
c-39
Excitatory (VGLUT1/2)
c-40
Excitatory (VGLUT1) SOX5+
c-41
Inhibitory (GAD1/2) NOS1+ M...
c-42
Inhibitory (GAD1/2) NOS1+ S...
c-43
Excitatory (VGLUT1/2) ETV1+
c-44
Excitatory (VGLUT1/2) NOS1+
c-45
Excitatory (VGLUT2)
c-46
Excitatory (VGLUT1)
c-47
Serotonergic Inhibitory (GA...
c-48
Excitatory (VGLUT1) FOXP2+ ...
c-49
Excitatory (VGLUT1)
c-50
Inhibitory (GAD1/2) RORB+ K
c-51
CALB2+
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - AMYGDALA, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Astrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocyte progenitor ...
c-7
Microglia
c-8
Oligodendrocytes
c-9
Astrocytes
c-10
Astrocytes (CD44+)
c-11
Microglia
c-12
Oligodendrocyte progenitor ...
c-13
Astrocytes
c-14
Oligodendrocytes
c-15
Astrocytes
c-16
Oligodendrocytes
c-17
Oligodendrocytes
c-18
Fibroblasts
c-19
Ependymal cells
c-20
Mural cells & vECs
c-21
Macrophages
c-22
Immature oligodendrocytes
c-23
Pericytes
c-24
NK-cells & T-cells
c-25
Oligodendrocyte progenitor ...
c-26
Vascular smooth muscle cell
c-27
Fibroblasts (BNC2+ KCNMA1+ ...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.2
Sample id
Sample description
nTPM
Basal amygdala nTPM: 78.4
2609
Male, age 75, right hemisphere
97.0
1955
Male, age 76, both hemispheres
85.5
2110
Male, age 80, left hemisphere
84.3
2243
Female, age 91, right hemisphere
74.4
2685
Female, age 94, left hemisphere
72.0
2827
Female, age 67, right hemisphere
57.4
Central amygdala nTPM: 87.2
2515
Male, age 75, right hemisphere
106.8
1905
Male, age 76, both hemispheres
89.4
2826
Female, age 94, left hemisphere
89.4
2239
Male, age 80, left hemisphere
79.1
2701
Female, age 91, right hemisphere
71.3
Corticomedial amygdala nTPM: 76.4
2428
Male, age 75, right hemisphere
98.7
2242
Female, age 91, right hemisphere
83.2
2240
Male, age 76, both hemispheres
73.9
2429
Female, age 94, left hemisphere
72.0
2829
Male, age 80, left hemisphere
66.2
2535
Female, age 67, right hemisphere
64.4
Lateral amygdala nTPM: 84.0
2516
Male, age 75, right hemisphere
97.9
2256
Male, age 80, left hemisphere
88.5
2534
Female, age 94, left hemisphere
85.8
1883
Male, age 76, both hemispheres
84.1
2255
Female, age 91, right hemisphere
80.8
2830
Female, age 67, right hemisphere
66.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
116.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 116.3
Samples: 181
Max nTPM: 240.8
Min nTPM: 45.9
Std nTPM: 33.7
Median nTPM: 110.3
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
240.8
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
223.2
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
221.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
213.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
210.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
200.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
191.5
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
191.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
189.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
185.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
175.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
173.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
166.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
163.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
160.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
160.1
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
159.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
158.7
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
157.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
156.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
155.7
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
154.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
152.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
152.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
150.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
150.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
149.0
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
147.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
147.4
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
146.9
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
146.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
146.1
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
145.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
144.8
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
144.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
143.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
143.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
141.2
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
139.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
138.2
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
137.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
136.7
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
134.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
134.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
134.5
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
134.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
132.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
131.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
131.8
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
131.6
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
131.1
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
131.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
129.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
129.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
127.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
127.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
126.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
126.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
124.3
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
124.0
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
123.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
123.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
123.2
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
123.0
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
122.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
122.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
122.3
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
121.4
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
121.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
120.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
119.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
119.4
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
119.3
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
118.5
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
117.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
117.6
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
115.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
114.8
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
114.3
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
114.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
114.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
113.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
112.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
112.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
112.1
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
111.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
111.5
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
111.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
111.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
110.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
110.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
110.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
110.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
109.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
109.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
109.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
108.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
108.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
107.9
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
107.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
107.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
106.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
106.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
105.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
105.4
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
104.6
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
104.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
103.4
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
103.1
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
102.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
102.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
102.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
101.7
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
100.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
100.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
99.0
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
98.4
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
98.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
97.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
97.6
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
97.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
97.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
97.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
96.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
96.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
95.9
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
95.6
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
95.4
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
95.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
95.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
95.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
95.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
94.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
93.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
93.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
92.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
92.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
92.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
91.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
91.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
91.4
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
91.0
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
90.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
90.4
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
90.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
89.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
89.8
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
89.0
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
88.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
88.4
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
88.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
87.9
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
87.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
87.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
87.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
86.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
85.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
84.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
82.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
80.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
80.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
80.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
80.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
79.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
79.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
78.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
78.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
76.9
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
76.4
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
75.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
75.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
73.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
71.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
69.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
68.1
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
67.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
65.2
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
64.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
57.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
49.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
45.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
37.4
Macaque sample
Sample description
nTPM
Amygdala nTPM: 37.5
Samples: 2
Max nTPM: 38.6
Min nTPM: 36.3
Sample A
36.3
Sample B
38.6
AMYGDALA - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
86.9
Pig sample
Sample description
nTPM
Amygdala nTPM: 86.9
Samples: 4
Max nTPM: 100.1
Min nTPM: 77.3
Sample A
Female
100.1
Sample B
Female
78.5
Sample C
Male
91.6
Sample D
Male
77.3
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
77.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 77.0
Samples: 4
Max nTPM: 83.0
Min nTPM: 73.0
Sample A
73.0
Sample B
76.8
Sample C
83.0
Sample D
75.3
AMYGDALA - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.5
Rat sample
Sample description
nTPM
Amygdala nTPM: 28.5
Samples: 4
Max nTPM: 31.5
Min nTPM: 23.5
Sample A
31.5
Sample A
29.0
Sample A
30.0
Sample A
23.5
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The Human Protein Atlas project is funded
