On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
160.1
nTPM
HPA Brain:
148.9
nTPM
GTEx:
160.1
nTPM
FANTOM5:
86.5
Scaled Tags Per Million
Macaque:
39.7
nTPM
Mouse:
40.5
nTPM
Rat:
35.2
nTPM
Pig:
168.8
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
6371
Sample
Intensity
Spinal cord_01
9677
Spinal cord_02
5647
Spinal cord_03
10437
Spinal cord_04
7095
Spinal cord_05
8581
Spinal cord_06
4923
Spinal cord_07
5409
Spinal cord_08
4781
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
148.9
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 129.1
2193
Male, age 75, both hemispheres
136.2
2818
Female, age 79, both hemispheres
135.0
2734
Male, age 80, both hemispheres
122.6
2819
Male, age 47, both hemispheres
122.5
Cervical spinal cord, central gray nTPM: 117.0
1981
Female, age 72, midline
148.0
2048
Male, age 55, midline
110.9
2816
Male, age 47, midline
110.2
2194
Female, age 79, both hemispheres
109.8
2565
Male, age 75, midline
106.0
Cervical spinal cord, dorsal horn nTPM: 120.4
2296
Male, age 66, both hemispheres
175.2
2173
Female, age 72, unknown
148.2
2069
Male, age 47, both hemispheres
125.2
1877
Male, age 55, unknown
98.6
2721
Male, age 90, both hemispheres
90.1
2297
Male, age 75, both hemispheres
85.3
Cervical spinal cord, ventral horn nTPM: 107.9
2098
Female, age 72, unknown
163.4
2068
Male, age 55, unknown
110.3
2809
Male, age 90, both hemispheres
105.2
2295
Male, age 66, both hemispheres
96.7
2480
Male, age 75, both hemispheres
88.5
2820
Female, age 79, both hemispheres
83.2
Dorsal funiculus (white matter) nTPM: 148.9
2064
Female, age 79, both hemispheres
166.4
2817
Male, age 47, both hemispheres
152.8
2810
Male, age 90, both hemispheres
150.5
2128
Male, age 75, both hemispheres
139.1
2812
Male, age 66, both hemispheres
135.4
Lateral funiculus (white matter) nTPM: 136.4
2099
Male, age 90, both hemispheres
170.3
2094
Female, age 79, both hemispheres
150.5
2192
Male, age 75, both hemispheres
118.9
2294
Male, age 66, both hemispheres
106.0
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
160.1
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 160.1
Samples: 204
Max nTPM: 267.9
Min nTPM: 70.9
Std nTPM: 35.9
Median nTPM: 160.2
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
267.9
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
250.9
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
250.7
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
250.0
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
232.6
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
230.1
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
229.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
229.7
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
222.5
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
218.4
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
217.7
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
216.0
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
212.0
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
209.4
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
207.3
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
206.3
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
205.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
205.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
204.6
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
203.7
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
201.6
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
201.5
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
201.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
200.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
199.0
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
199.0
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
198.7
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
198.2
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
197.4
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
195.7
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
195.0
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
194.8
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
194.5
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
194.4
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
193.5
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
192.4
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
191.8
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
190.7
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
190.7
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
190.6
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
190.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
190.2
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
188.7
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
188.6
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
188.5
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
188.2
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
188.0
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
187.8
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
187.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
186.5
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
186.4
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
184.5
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
184.1
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
182.9
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
182.4
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
182.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
181.4
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
180.9
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
180.6
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
180.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
179.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
179.4
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
179.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
178.8
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
178.1
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
177.4
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
177.4
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
176.6
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
176.0
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
175.5
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
174.5
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
174.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
174.4
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
174.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
174.0
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
172.1
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
171.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
171.6
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
171.3
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
170.9
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
170.2
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
169.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
169.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
168.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
168.0
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
167.7
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
167.6
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
167.2
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
167.0
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
166.8
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
166.7
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
166.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
166.4
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
165.7
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
165.4
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
164.4
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
163.4
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
163.0
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
162.2
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
162.1
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
162.0
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
160.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
160.2
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
160.0
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
159.4
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
159.2
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
158.9
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
158.4
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
158.3
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
158.0
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
157.6
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
157.4
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
157.3
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
156.3
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
155.6
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
154.6
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
154.5
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
153.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
153.5
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
153.4
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
152.3
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
152.0
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
151.9
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
151.3
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
150.9
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
150.4
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
150.2
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
149.7
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
149.7
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
149.5
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
149.2
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
148.2
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
147.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
145.2
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
143.8
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
143.6
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
143.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
142.6
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
142.6
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
142.0
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
141.8
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
141.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
141.3
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
141.2
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
140.8
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
140.7
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
140.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
138.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
138.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
136.9
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
136.1
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
135.5
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
135.4
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
134.9
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
134.8
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
134.7
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
134.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
133.3
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
132.1
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
131.0
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
129.5
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
127.1
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
125.3
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
124.7
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
124.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
124.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
124.2
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
123.6
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
123.1
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
123.1
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
121.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
121.1
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
120.8
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
119.9
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
118.8
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
118.4
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
118.1
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
118.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
117.8
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
116.7
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
116.5
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
115.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
115.1
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
114.4
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
113.5
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
113.3
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
112.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
111.0
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
110.7
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
109.2
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
108.8
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
108.7
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
106.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
105.6
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
103.3
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
100.5
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
100.2
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
96.9
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
87.7
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
82.5
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
80.6
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
78.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
71.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
70.9
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.7
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 30.3
Samples: 2
Max nTPM: 39.9
Min nTPM: 20.7
Sample A
20.7
Sample B
39.9
Ventral spinal cord nTPM: 39.7
Samples: 1
Max nTPM: 39.7
Min nTPM: 39.7
Sample A
39.7
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
168.8
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 135.8
Samples: 4
Max nTPM: 153.0
Min nTPM: 120.2
Sample A
Female
130.2
Sample B
Female
120.2
Sample C
Male
153.0
Sample D
Male
139.8
Ventral spinal cord nTPM: 168.8
Samples: 4
Max nTPM: 187.6
Min nTPM: 149.0
Sample A
Female
171.3
Sample B
Female
167.4
Sample C
Male
187.6
Sample D
Male
149.0
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.5
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 40.5
Samples: 4
Max nTPM: 41.9
Min nTPM: 38.7
Sample A
38.7
Sample B
40.2
Sample C
41.3
Sample D
41.9
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.2
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 35.3
Samples: 4
Max nTPM: 37.3
Min nTPM: 33.4
Sample A
33.4
Sample A
35.3
Sample A
37.3
Sample A
35.1
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The Human Protein Atlas project is funded
