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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:268.0 nTPM
HPA Brain:211.8 nTPM
GTEx:268.0 nTPM
FANTOM5:253.6 Scaled Tags Per Million
Pig:147.0 nTPM
Mouse:94.9 nTPM
Allen mouse:3.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.8
Sample id Sample description nTPM
Amygdala
nTPM: 192.1
2695 Female, age 67, right hemisphere 204.7
2514 Male, age 75, right hemisphere 204.3
2814 Male, age 76, right hemisphere 195.0
1987 Female, age 91, left hemisphere 189.7
2517 Female, age 94, left hemisphere 166.9
Basal amygdala
nTPM: 185.7
2609 Male, age 75, right hemisphere 219.5
2827 Female, age 67, right hemisphere 202.7
2685 Female, age 94, left hemisphere 176.6
2243 Female, age 91, right hemisphere 174.5
1955 Male, age 76, both hemispheres 171.3
2110 Male, age 80, left hemisphere 169.4
Central amygdala
nTPM: 211.8
2826 Female, age 94, left hemisphere 235.9
2515 Male, age 75, right hemisphere 222.9
2701 Female, age 91, right hemisphere 216.5
2239 Male, age 80, left hemisphere 196.0
1905 Male, age 76, both hemispheres 187.5
Corticomedial amygdala
nTPM: 178.5
2428 Male, age 75, right hemisphere 221.5
2829 Male, age 80, left hemisphere 203.5
2535 Female, age 67, right hemisphere 176.6
2242 Female, age 91, right hemisphere 166.2
2429 Female, age 94, left hemisphere 160.2
2240 Male, age 76, both hemispheres 143.1
Lateral amygdala
nTPM: 198.7
2516 Male, age 75, right hemisphere 222.0
2830 Female, age 67, right hemisphere 211.9
2255 Female, age 91, right hemisphere 209.9
2534 Female, age 94, left hemisphere 195.1
2256 Male, age 80, left hemisphere 179.9
1883 Male, age 76, both hemispheres 173.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 268.0
Samples: 181

Max nTPM: 499.6
Min nTPM: 82.8
Std nTPM: 68.6
Median nTPM: 264.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 499.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 476.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 422.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 401.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 400.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 395.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 388.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 386.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 382.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 381.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 377.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 374.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 373.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 371.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 369.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 369.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 362.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 361.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 359.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 354.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 352.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 349.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 343.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 339.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 337.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 337.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 334.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 333.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 332.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 330.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 329.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 327.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 326.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 324.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 323.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 315.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 314.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 314.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 313.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 312.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 310.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 309.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 309.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 309.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 308.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 308.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 308.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 308.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 303.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 302.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 302.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 302.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 298.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 297.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 295.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 295.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 295.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 292.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 292.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 291.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 290.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 289.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 289.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 288.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 288.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 285.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 283.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 282.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 281.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 280.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 280.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 280.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 280.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 279.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 278.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 278.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 277.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 277.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 277.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 277.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 276.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 275.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 274.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 274.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 271.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 270.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 269.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 267.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 267.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 266.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 264.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 264.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 264.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 263.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 261.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 261.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 261.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 260.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 259.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 259.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 259.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 258.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 258.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 257.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 257.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 256.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 255.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 254.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 252.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 252.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 252.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 251.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 248.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 247.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 247.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 247.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 244.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 243.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 242.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 242.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 241.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 239.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 237.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 236.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 235.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 234.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 234.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 233.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 233.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 233.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 232.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 232.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 230.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 227.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 227.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 227.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 227.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 226.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 226.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 226.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 225.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 225.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 225.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 223.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 223.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 221.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 220.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 220.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 220.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 219.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 219.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 219.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 218.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 207.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 205.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 203.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 202.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 200.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 198.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 194.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 193.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 192.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 189.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 182.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 179.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 176.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 170.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 170.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 167.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 164.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 160.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 157.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 152.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 125.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 123.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 120.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 116.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 103.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 95.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 82.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

253.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 253.6
FF:10151-102I7 76 years, female 253.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.0
Pig sample Sample description nTPM
Amygdala
nTPM: 147.0
Samples: 4

Max nTPM: 168.2
Min nTPM: 129.6
Sample A Female 146.1
Sample B Female 168.2
Sample C Male 144.0
Sample D Male 129.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 94.8
Samples: 4

Max nTPM: 111.4
Min nTPM: 80.5
Sample A Male 111.4
Sample B Male 100.0
Sample C Female 87.4
Sample D Female 80.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.2
69548958 Antisense, RP_050426_02_F05, Mouse strain C57BL/6J (56 days, male) 3.2

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