MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:239.1 nTPM
HPA Brain:192.4 nTPM
GTEx:239.1 nTPM
FANTOM5:264.8 Scaled Tags Per Million
Pig:182.7 nTPM
Mouse:77.8 nTPM
Allen mouse:2.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 192.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 189.1
2586 Male, age 75, left hemisphere 216.8
1827 Male, age 72, unknown 209.6
1870 Female, age 42, unknown 196.7
2828 Female, age 72, unknown 191.8
2411 Female, age 72, unknown 190.6
2219 Male, age 76, both hemispheres 186.3
1833 Male, age 53, unknown 182.6
1830 Male, age 51, unknown 176.1
2019 Male, age 18, unknown 174.2
2666 Male, age 74, left hemisphere 165.9
Dorsal raphe nucleus
nTPM: 174.7
2750 Male, age 76, both hemispheres 182.7
2016 Female, age 72, unknown 180.1
2298 Female, age 72, unknown 176.2
2047 Male, age 72, unknown 169.9
1828 Male, age 53, unknown 164.8
Inferior colliculus
nTPM: 183.6
1890 Male, age 53, unknown 189.5
2849 Male, age 72, unknown 187.9
2097 Female, age 72, unknown 183.8
1848 Female, age 42, unknown 173.2
Median raphe nucleus
nTPM: 180.4
2220 Male, age 76, midline 180.4
Periaquaductal grey, anterior
nTPM: 192.4
2502 Female, age 75, unknown 208.6
1795 Male, age 51, unknown 184.7
1947 Male, age 18, unknown 183.7
Periaquaductal grey, dorsal
nTPM: 186.5
1840 Male, age 53, unknown 208.1
1831 Male, age 72, unknown 184.9
2850 Male, age 76, both hemispheres 176.7
2464 Female, age 72, unknown 176.2
Periaquaductal grey, lateral
nTPM: 191.5
2053 Male, age 18, unknown 205.2
2272 Male, age 74, both hemispheres 186.3
2140 Male, age 76, both hemispheres 183.0
Pretectal area
nTPM: 189.0
2667 Female, age 75, unknown 207.0
2825 Male, age 18, unknown 205.2
1815 Male, age 53, unknown 194.6
2273 Male, age 74, both hemispheres 194.0
2007 Male, age 72, unknown 188.6
1817 Female, age 42, unknown 187.8
2407 Male, age 75, both hemispheres 186.9
2316 Male, age 76, right hemisphere 184.7
2224 Female, age 72, unknown 182.9
1816 Male, age 51, unknown 181.1
1944 Female, age 72, unknown 166.2
Red nucleus
nTPM: 189.0
2584 Male, age 75, left hemisphere 220.9
2503 Female, age 72, unknown 218.6
2588 Male, age 74, left hemisphere 214.3
1865 Male, age 51, unknown 194.0
1904 Male, age 53, unknown 185.4
1821 Female, age 72, unknown 182.0
2227 Male, age 72, unknown 181.6
2769 Male, age 72, unknown 180.9
2823 Male, age 76, right hemisphere 179.9
2725 Female, age 75, unknown 177.9
2785 Male, age 18, unknown 168.0
1954 Female, age 42, unknown 165.1
Substantia nigra
nTPM: 181.5
2590 Female, age 75, unknown 199.6
1851 Male, age 51, unknown 196.8
2583 Male, age 75, right hemisphere 193.5
2665 Male, age 74, both hemispheres 188.1
1916 Female, age 42, unknown 183.0
2699 Male, age 18, unknown 182.7
2409 Female, age 72, unknown 181.4
1889 Female, age 72, unknown 170.5
2241 Male, age 72, unknown 166.9
1941 Male, age 53, unknown 152.0
Superior colliculus
nTPM: 189.3
2664 Male, age 75, both hemispheres 240.9
2261 Male, age 18, unknown 202.1
1995 Male, age 72, unknown 199.5
1913 Female, age 42, unknown 194.7
1796 Male, age 53, unknown 194.1
1895 Male, age 76, right hemisphere 191.7
1839 Male, age 51, unknown 177.6
2087 Female, age 72, unknown 172.2
2587 Male, age 74, left hemisphere 169.5
2668 Female, age 75, unknown 151.1
Ventral tegmental area
nTPM: 178.5
1942 Male, age 51, unknown 195.0
2021 Male, age 53, unknown 191.2
1915 Female, age 42, unknown 181.5
2223 Female, age 72, unknown 173.4
2410 Female, age 72, unknown 167.2
2218 Male, age 76, both hemispheres 162.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 239.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 239.1
Samples: 183

Max nTPM: 628.3
Min nTPM: 68.0
Std nTPM: 77.6
Median nTPM: 231.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 628.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 501.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 494.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 420.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 409.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 403.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 403.4
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 371.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 363.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 349.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 347.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 264.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 264.8
FF:10158-103A5 76 years, female 264.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 182.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 182.7
Samples: 4

Max nTPM: 208.5
Min nTPM: 153.4
Sample A Female 153.4
Sample B Female 191.7
Sample C Male 177.0
Sample D Male 208.5
Midbrain
nTPM: 173.4
Samples: 4

Max nTPM: 201.5
Min nTPM: 146.0
Sample A Female 201.5
Sample B Female 186.1
Sample C Male 159.8
Sample D Male 146.0
Periaqueductal gray
nTPM: 169.4
Samples: 3

Max nTPM: 183.0
Min nTPM: 158.7
Sample B Female 183.0
Sample C Male 166.4
Sample D Male 158.7
Superior colliculi
nTPM: 169.8
Samples: 4

Max nTPM: 188.6
Min nTPM: 152.4
Sample A Female 152.4
Sample B Female 188.6
Sample C Male 176.1
Sample D Male 162.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 77.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.8
Samples: 4

Max nTPM: 103.4
Min nTPM: 63.4
Sample A Male 103.4
Sample B Male 76.8
Sample C Female 63.4
Sample D Female 67.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
69548958 Antisense, RP_050426_02_F05, Mouse strain C57BL/6J (56 days, male) 2.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo