On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
239.1
nTPM
HPA Brain:
193.1
nTPM
GTEx:
239.1
nTPM
FANTOM5:
264.8
Scaled Tags Per Million
Macaque:
92.6
nTPM
Mouse:
62.2
nTPM
Pig:
174.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
193.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 189.8
2586
Male, age 75, left hemisphere
217.0
1827
Male, age 72, unknown
210.4
1870
Female, age 42, unknown
197.3
2828
Female, age 72, unknown
192.6
2411
Female, age 72, unknown
191.3
2219
Male, age 76, both hemispheres
187.5
1833
Male, age 53, unknown
183.3
1830
Male, age 51, unknown
176.8
2019
Male, age 18, unknown
174.8
2666
Male, age 74, left hemisphere
166.6
Dorsal raphe nucleus nTPM: 175.5
2750
Male, age 76, both hemispheres
183.8
2016
Female, age 72, unknown
180.9
2298
Female, age 72, unknown
176.9
2047
Male, age 72, unknown
170.6
1828
Male, age 53, unknown
165.5
Inferior colliculus nTPM: 184.3
1890
Male, age 53, unknown
190.2
2849
Male, age 72, unknown
188.7
2097
Female, age 72, unknown
184.5
1848
Female, age 42, unknown
173.8
Median raphe nucleus nTPM: 181.5
2220
Male, age 76, midline
181.5
Periaquaductal grey, anterior nTPM: 193.1
2502
Female, age 75, unknown
209.5
1795
Male, age 51, unknown
185.5
1947
Male, age 18, unknown
184.4
Periaquaductal grey, dorsal nTPM: 187.3
1840
Male, age 53, unknown
208.9
1831
Male, age 72, unknown
185.6
2850
Male, age 76, both hemispheres
177.9
2464
Female, age 72, unknown
176.8
Periaquaductal grey, lateral nTPM: 192.5
2053
Male, age 18, unknown
206.1
2272
Male, age 74, both hemispheres
187.1
2140
Male, age 76, both hemispheres
184.3
Pretectal area nTPM: 189.7
2667
Female, age 75, unknown
207.8
2825
Male, age 18, unknown
206.0
1815
Male, age 53, unknown
195.3
2273
Male, age 74, both hemispheres
194.8
2007
Male, age 72, unknown
189.4
1817
Female, age 42, unknown
188.4
2407
Male, age 75, both hemispheres
187.2
2316
Male, age 76, right hemisphere
185.9
2224
Female, age 72, unknown
183.6
1816
Male, age 51, unknown
181.7
1944
Female, age 72, unknown
166.8
Red nucleus nTPM: 189.8
2584
Male, age 75, left hemisphere
221.1
2503
Female, age 72, unknown
219.3
2588
Male, age 74, left hemisphere
215.0
1865
Male, age 51, unknown
194.8
1904
Male, age 53, unknown
186.3
1821
Female, age 72, unknown
182.7
2227
Male, age 72, unknown
182.3
2769
Male, age 72, unknown
181.7
2823
Male, age 76, right hemisphere
181.1
2725
Female, age 75, unknown
178.6
2785
Male, age 18, unknown
168.7
1954
Female, age 42, unknown
165.7
Substantia nigra nTPM: 182.1
2590
Female, age 75, unknown
200.3
1851
Male, age 51, unknown
197.6
2583
Male, age 75, right hemisphere
193.5
2665
Male, age 74, both hemispheres
188.9
1916
Female, age 42, unknown
183.8
2699
Male, age 18, unknown
183.5
2409
Female, age 72, unknown
182.0
1889
Female, age 72, unknown
171.1
2241
Male, age 72, unknown
167.5
1941
Male, age 53, unknown
152.6
Superior colliculus nTPM: 190.1
2664
Male, age 75, both hemispheres
241.2
2261
Male, age 18, unknown
202.9
1995
Male, age 72, unknown
200.3
1913
Female, age 42, unknown
195.5
1796
Male, age 53, unknown
194.9
1895
Male, age 76, right hemisphere
192.9
1839
Male, age 51, unknown
178.3
2087
Female, age 72, unknown
172.9
2587
Male, age 74, left hemisphere
170.1
2668
Female, age 75, unknown
151.8
Ventral tegmental area nTPM: 179.2
1942
Male, age 51, unknown
195.8
2021
Male, age 53, unknown
192.0
1915
Female, age 42, unknown
182.2
2223
Female, age 72, unknown
174.1
2410
Female, age 72, unknown
167.9
2218
Male, age 76, both hemispheres
163.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
239.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 239.1
Samples: 183
Max nTPM: 628.3
Min nTPM: 68.0
Std nTPM: 77.6
Median nTPM: 231.9
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
628.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
501.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
494.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
420.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
409.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
403.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
403.4
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
371.7
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
363.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
349.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
347.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
344.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
341.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
336.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
332.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
329.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
329.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
328.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
327.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
327.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
327.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
319.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
318.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
314.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
312.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
312.0
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
309.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
301.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
301.0
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
299.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
298.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
297.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
296.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
296.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
296.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
295.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
294.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
289.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
287.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
285.3
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
284.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
283.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
282.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
282.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
282.3
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
278.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
276.6
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
276.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
274.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
272.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
271.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
270.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
270.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
268.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
268.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
268.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
265.7
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
264.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
264.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
261.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
261.4
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
260.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
259.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
259.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
258.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
253.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
252.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
251.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
251.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
250.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
248.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
247.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
243.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
242.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
242.4
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
241.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
239.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
238.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
237.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
237.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
236.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
236.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
236.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
236.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
235.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
235.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
234.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
233.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
233.0
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
232.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
232.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
231.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
231.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
231.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
230.3
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
230.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
229.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
229.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
229.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
228.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
228.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
228.7
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
228.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
227.3
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
226.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
225.7
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
225.4
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
223.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
223.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
221.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
221.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
220.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
220.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
219.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
218.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
217.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
216.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
215.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
214.9
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
213.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
213.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
212.9
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
212.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
212.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
211.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
211.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
210.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
209.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
207.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
207.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
207.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
206.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
205.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
205.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
203.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
201.9
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
201.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
200.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
200.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
198.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
197.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
194.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
193.6
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
193.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
192.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
191.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
190.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
189.7
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
188.7
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
186.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
184.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
182.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
180.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
180.5
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
174.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
173.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
172.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
170.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
164.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
161.7
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
161.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
159.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
142.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
142.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
139.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
138.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
138.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
137.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
127.6
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
122.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
121.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
118.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
116.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
110.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
109.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
105.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
102.2
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
95.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
89.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
87.7
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
71.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
71.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
68.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 92.6
Samples: 1
Max nTPM: 92.6
Min nTPM: 92.6
Sample A
92.6
Midbrain nTPM: 76.6
Samples: 1
Max nTPM: 76.6
Min nTPM: 76.6
Sample A
76.6
Superior colliculi nTPM: 76.6
Samples: 1
Max nTPM: 76.6
Min nTPM: 76.6
Sample A
76.6
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
174.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 174.8
Samples: 3
Max nTPM: 192.4
Min nTPM: 154.3
Sample A
Female
154.3
Sample B
Female
192.4
Sample C
Male
177.7
Midbrain nTPM: 164.5
Samples: 3
Max nTPM: 186.8
Min nTPM: 146.3
Sample B
Female
186.8
Sample C
Male
160.3
Sample D
Male
146.3
Periaqueductal gray nTPM: 169.8
Samples: 3
Max nTPM: 183.5
Min nTPM: 159.0
Sample B
Female
183.5
Sample C
Male
167.0
Sample D
Male
159.0
Superior colliculi nTPM: 170.7
Samples: 4
Max nTPM: 189.5
Min nTPM: 153.5
Sample A
Female
153.5
Sample B
Female
189.5
Sample C
Male
177.0
Sample D
Male
162.8
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
62.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 62.2
Samples: 4
Max nTPM: 74.6
Min nTPM: 50.5
Sample A
74.6
Sample B
70.0
Sample C
50.5
Sample D
53.6
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The Human Protein Atlas project is funded
