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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
175.8
Sample id
Sample description
nTPM
Amygdala nTPM: 175.8
2695
Female, age 67, right hemisphere
209.1
2814
Male, age 76, right hemisphere
197.2
2514
Male, age 75, right hemisphere
179.8
1987
Female, age 91, left hemisphere
148.6
2517
Female, age 94, left hemisphere
144.3
Basal amygdala nTPM: 153.7
2609
Male, age 75, right hemisphere
229.0
2110
Male, age 80, left hemisphere
170.1
2243
Female, age 91, right hemisphere
160.3
1955
Male, age 76, both hemispheres
140.5
2685
Female, age 94, left hemisphere
120.6
2827
Female, age 67, right hemisphere
101.7
Central amygdala nTPM: 162.2
1905
Male, age 76, both hemispheres
189.6
2515
Male, age 75, right hemisphere
186.6
2826
Female, age 94, left hemisphere
179.4
2239
Male, age 80, left hemisphere
150.7
2701
Female, age 91, right hemisphere
104.9
Corticomedial amygdala nTPM: 150.1
2428
Male, age 75, right hemisphere
188.1
2829
Male, age 80, left hemisphere
178.4
2242
Female, age 91, right hemisphere
158.1
2429
Female, age 94, left hemisphere
138.0
2240
Male, age 76, both hemispheres
132.3
2535
Female, age 67, right hemisphere
105.7
Lateral amygdala nTPM: 161.6
2516
Male, age 75, right hemisphere
242.1
1883
Male, age 76, both hemispheres
181.8
2534
Female, age 94, left hemisphere
171.0
2830
Female, age 67, right hemisphere
135.3
2256
Male, age 80, left hemisphere
123.3
2255
Female, age 91, right hemisphere
116.3
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
156.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 156.5
Samples: 181
Max nTPM: 314.2
Min nTPM: 40.6
Std nTPM: 49.9
Median nTPM: 158.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
314.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
286.3
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
285.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
264.9
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
263.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
261.5
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
255.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
247.7
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
247.5
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
240.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
238.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
237.4
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
232.7
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
232.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
230.2
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
226.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
220.0
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
219.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
218.2
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
217.8
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
216.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
216.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
215.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
213.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
208.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
206.9
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
203.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
203.0
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
201.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
200.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
200.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
199.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
198.3
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
195.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
195.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
194.4
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
193.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
193.5
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
191.7
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
191.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
190.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
190.3
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
190.2
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
190.0
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
189.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
188.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
188.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
188.3
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
187.2
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
186.1
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
185.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
183.9
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
183.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
182.8
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
180.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
174.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
173.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
173.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
173.5
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
172.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
172.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
172.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
172.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
171.3
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
171.3
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
169.7
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
169.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
168.9
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
168.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
168.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
168.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
167.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
167.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
166.8
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
166.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
166.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
165.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
165.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
165.3
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
164.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
164.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
164.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
161.9
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
161.5
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
161.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
160.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
160.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
160.4
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
160.0
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
159.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
158.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
158.9
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
158.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
158.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
156.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
156.0
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
153.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
152.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
151.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
150.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
146.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
146.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
146.7
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
146.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
146.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
145.6
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
145.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
144.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
143.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
143.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
142.7
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
142.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
141.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
140.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
140.1
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
139.8
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
139.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
138.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
138.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
138.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
137.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
136.2
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
136.0
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
134.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
134.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
132.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
131.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
130.4
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
129.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
128.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
127.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
127.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
125.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
125.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
125.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
123.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
122.4
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
122.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
122.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
121.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
117.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
117.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
116.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
116.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
114.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
113.8
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
110.3
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
107.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
105.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
105.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
102.0
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
101.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
101.0
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
100.9
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
99.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
97.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
96.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
94.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
94.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
93.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
92.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
91.2
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
90.5
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
89.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
88.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
88.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
87.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
85.6
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
84.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
84.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
81.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
81.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
79.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
76.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
73.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
72.8
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
72.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
51.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
48.8
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
42.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
40.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
111.0
Pig sample
Sample description
nTPM
Amygdala nTPM: 111.0
Samples: 4
Max nTPM: 126.5
Min nTPM: 95.7
Sample A
Female
126.5
Sample B
Female
107.6
Sample C
Male
114.1
Sample D
Male
95.7
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
385.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 385.5
Samples: 4
Max nTPM: 425.5
Min nTPM: 366.3
Sample A
Male
371.7
Sample B
Male
366.3
Sample C
Female
425.5
Sample D
Female
378.4
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
