On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
95.8
nTPM
HPA Brain:
158.1
nTPM
GTEx:
95.8
nTPM
FANTOM5:
162.2
Scaled Tags Per Million
Macaque:
152.9
nTPM
Mouse:
358.6
nTPM
Rat:
250.8
nTPM
Pig:
168.5
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
158.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 141.0
2586
Male, age 75, left hemisphere
187.5
2828
Female, age 72, unknown
187.2
2019
Male, age 18, unknown
153.1
2411
Female, age 72, unknown
146.8
2666
Male, age 74, left hemisphere
144.5
1827
Male, age 72, unknown
142.5
1870
Female, age 42, unknown
122.0
1833
Male, age 53, unknown
114.2
2219
Male, age 76, both hemispheres
111.4
1830
Male, age 51, unknown
101.3
Dorsal raphe nucleus nTPM: 136.2
2298
Female, age 72, unknown
156.9
1828
Male, age 53, unknown
149.6
2047
Male, age 72, unknown
131.5
2750
Male, age 76, both hemispheres
124.9
2016
Female, age 72, unknown
118.2
Inferior colliculus nTPM: 129.3
2097
Female, age 72, unknown
142.8
1890
Male, age 53, unknown
135.8
1848
Female, age 42, unknown
132.2
2849
Male, age 72, unknown
106.3
Median raphe nucleus nTPM: 117.3
2220
Male, age 76, midline
117.3
Periaquaductal grey, anterior nTPM: 151.6
1795
Male, age 51, unknown
162.1
2502
Female, age 75, unknown
150.5
1947
Male, age 18, unknown
142.2
Periaquaductal grey, dorsal nTPM: 121.1
2850
Male, age 76, both hemispheres
126.0
1831
Male, age 72, unknown
119.9
1840
Male, age 53, unknown
119.7
2464
Female, age 72, unknown
118.7
Periaquaductal grey, lateral nTPM: 112.3
2272
Male, age 74, both hemispheres
115.5
2053
Male, age 18, unknown
114.4
2140
Male, age 76, both hemispheres
107.0
Pretectal area nTPM: 158.1
1816
Male, age 51, unknown
203.2
2007
Male, age 72, unknown
194.3
1817
Female, age 42, unknown
191.5
1944
Female, age 72, unknown
191.3
2667
Female, age 75, unknown
185.0
1815
Male, age 53, unknown
166.7
2273
Male, age 74, both hemispheres
136.9
2224
Female, age 72, unknown
129.0
2407
Male, age 75, both hemispheres
121.2
2316
Male, age 76, right hemisphere
111.5
2825
Male, age 18, unknown
108.3
Red nucleus nTPM: 122.9
2785
Male, age 18, unknown
149.2
1821
Female, age 72, unknown
143.4
2503
Female, age 72, unknown
134.2
2823
Male, age 76, right hemisphere
132.8
2725
Female, age 75, unknown
131.4
2769
Male, age 72, unknown
126.3
2227
Male, age 72, unknown
121.8
1865
Male, age 51, unknown
118.7
1954
Female, age 42, unknown
117.6
1904
Male, age 53, unknown
111.6
2588
Male, age 74, left hemisphere
96.8
2584
Male, age 75, left hemisphere
91.3
Substantia nigra nTPM: 138.5
1916
Female, age 42, unknown
207.6
1889
Female, age 72, unknown
181.6
1851
Male, age 51, unknown
170.7
1941
Male, age 53, unknown
158.1
2699
Male, age 18, unknown
138.9
2241
Male, age 72, unknown
137.4
2409
Female, age 72, unknown
119.0
2665
Male, age 74, both hemispheres
103.8
2590
Female, age 75, unknown
91.7
2583
Male, age 75, right hemisphere
76.6
Superior colliculus nTPM: 147.6
2087
Female, age 72, unknown
192.2
2668
Female, age 75, unknown
164.1
1796
Male, age 53, unknown
161.0
2261
Male, age 18, unknown
152.8
2587
Male, age 74, left hemisphere
150.8
2664
Male, age 75, both hemispheres
148.1
1995
Male, age 72, unknown
131.5
1913
Female, age 42, unknown
130.9
1839
Male, age 51, unknown
123.5
1895
Male, age 76, right hemisphere
121.3
Ventral tegmental area nTPM: 139.7
1915
Female, age 42, unknown
163.4
2410
Female, age 72, unknown
156.4
2218
Male, age 76, both hemispheres
150.3
2223
Female, age 72, unknown
130.5
1942
Male, age 51, unknown
126.2
2021
Male, age 53, unknown
111.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
95.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 95.8
Samples: 183
Max nTPM: 238.7
Min nTPM: 23.7
Std nTPM: 35.3
Median nTPM: 91.8
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
238.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
208.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
202.2
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
198.1
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
192.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
176.4
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
171.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
170.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
164.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
163.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
155.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
153.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
152.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
148.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
148.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
145.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
144.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
141.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
140.5
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
140.1
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
138.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
137.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
134.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
132.6
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
131.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
130.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
128.9
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
128.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
128.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
127.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
126.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
124.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
123.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
122.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
121.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
121.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
121.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
121.3
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
120.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
118.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
116.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
114.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
114.3
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
113.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
113.1
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
112.9
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
112.6
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
112.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
111.9
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
111.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
110.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
109.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
109.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
109.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
109.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
108.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
107.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
107.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
105.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
105.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
105.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
102.7
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
102.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
101.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
101.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
101.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
100.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
100.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
100.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
99.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
99.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
99.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
98.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
98.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
98.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
98.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
98.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
97.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
97.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
96.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
96.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
95.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
95.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
95.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
93.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
93.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
92.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
92.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
92.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
92.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
91.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
91.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
91.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
90.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
90.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
89.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
89.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
88.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
88.6
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
88.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
88.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
86.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
86.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
85.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
85.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
85.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
85.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
84.8
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
84.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
83.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
83.8
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
83.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
82.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
82.4
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
82.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
81.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
81.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
80.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
80.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
79.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
79.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
79.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
79.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
78.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
77.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
77.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
75.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
75.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
73.9
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
73.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
73.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
73.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
73.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
72.2
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
72.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
71.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
71.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
69.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
69.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
69.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
69.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
69.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
69.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
69.2
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
68.8
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
68.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
67.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
65.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
64.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
63.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
63.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
62.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
62.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
61.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
61.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
60.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
60.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
59.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
58.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
58.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
57.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
57.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
57.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
57.2
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
56.2
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
55.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
55.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
55.1
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
55.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
54.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
53.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
51.6
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
48.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
47.2
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
47.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
45.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
44.3
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
43.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
42.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
41.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
38.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
36.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
23.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
152.9
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 118.0
Samples: 1
Max nTPM: 118.0
Min nTPM: 118.0
Sample A
118.0
Midbrain nTPM: 100.3
Samples: 1
Max nTPM: 100.3
Min nTPM: 100.3
Sample A
100.3
Superior colliculi nTPM: 152.9
Samples: 1
Max nTPM: 152.9
Min nTPM: 152.9
Sample A
152.9
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
168.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 133.0
Samples: 3
Max nTPM: 150.7
Min nTPM: 109.6
Sample A
Female
150.7
Sample B
Female
109.6
Sample C
Male
138.6
Midbrain nTPM: 153.3
Samples: 3
Max nTPM: 193.2
Min nTPM: 131.9
Sample B
Female
134.7
Sample C
Male
193.2
Sample D
Male
131.9
Periaqueductal gray nTPM: 106.2
Samples: 3
Max nTPM: 126.0
Min nTPM: 84.8
Sample B
Female
126.0
Sample C
Male
107.7
Sample D
Male
84.8
Superior colliculi nTPM: 168.5
Samples: 4
Max nTPM: 213.0
Min nTPM: 144.8
Sample A
Female
168.3
Sample B
Female
144.8
Sample C
Male
213.0
Sample D
Male
147.9
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
358.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 358.6
Samples: 4
Max nTPM: 362.7
Min nTPM: 355.5
Sample A
356.3
Sample B
359.9
Sample C
362.7
Sample D
355.5
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
250.8
Rat sample
Sample description
nTPM
Midbrain nTPM: 250.8
Samples: 4
Max nTPM: 258.9
Min nTPM: 238.1
Sample A
258.9
Sample A
254.9
Sample A
251.1
Sample A
238.1
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The Human Protein Atlas project is funded
