A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
148.3
nTPM
Monaco:
1003.4
nTPM
Schmiedel:
489.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
148.3
HPA sample
nTPM
Memory B-cell nTPM: 148.3
Samples: 6
Max nTPM: 212.4
Min nTPM: 88.9
P10809_1017
145.1
P10809_1025
212.4
P10809_1044
88.9
P10809_1063
135.6
P10809_1092
167.9
P10809_1105
139.6
Naive B-cell nTPM: 102.2
Samples: 6
Max nTPM: 208.1
Min nTPM: 69.3
P10809_1011
69.3
P10809_1029
98.5
P10809_1048
208.1
P10809_1067
76.3
P10809_1091
86.1
P10809_1104
74.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1003.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 541.1
Samples: 4
Max nTPM: 771.7
Min nTPM: 347.5
RHH5310_R3677
771.7
RHH5218_R3590
538.8
RHH5247_R3619
506.2
RHH5276_R3648
347.5
Naive B-cell nTPM: 426.7
Samples: 4
Max nTPM: 577.6
Min nTPM: 276.3
RHH5308_R3675
451.1
RHH5216_R3588
577.6
RHH5245_R3617
276.3
RHH5274_R3646
401.8
Non-switched memory B-cell nTPM: 537.4
Samples: 4
Max nTPM: 661.8
Min nTPM: 391.2
RHH5309_R3676
661.8
RHH5217_R3589
617.4
RHH5246_R3618
479.1
RHH5275_R3647
391.2
Plasmablast nTPM: 1003.4
Samples: 4
Max nTPM: 1223.5
Min nTPM: 842.3
RHH5312_R3679
960.0
RHH5220_R3592
1223.5
RHH5249_R3621
987.8
RHH5278_R3650
842.3
Switched memory B-cell nTPM: 607.4
Samples: 4
Max nTPM: 730.0
Min nTPM: 453.7
RHH5311_R3678
642.8
RHH5219_R3591
730.0
RHH5248_R3620
603.2
RHH5277_R3649
453.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
489.5
Schmiedel sample id
TPM
Naive B-cell TPM: 489.5
Samples: 91
Max TPM: 673.4
Min TPM: 320.5
B_CELL_NAIVE_1
673.4
B_CELL_NAIVE_2
638.0
B_CELL_NAIVE_3
609.3
B_CELL_NAIVE_4
591.6
B_CELL_NAIVE_5
576.0
B_CELL_NAIVE_6
569.2
B_CELL_NAIVE_7
568.0
B_CELL_NAIVE_8
551.9
B_CELL_NAIVE_9
550.9
B_CELL_NAIVE_10
549.6
B_CELL_NAIVE_11
549.4
B_CELL_NAIVE_12
544.9
B_CELL_NAIVE_13
539.6
B_CELL_NAIVE_14
537.3
B_CELL_NAIVE_15
536.1
B_CELL_NAIVE_16
534.8
B_CELL_NAIVE_17
531.5
B_CELL_NAIVE_18
530.5
B_CELL_NAIVE_19
530.4
B_CELL_NAIVE_20
525.7
B_CELL_NAIVE_21
520.2
B_CELL_NAIVE_22
519.1
B_CELL_NAIVE_23
512.2
B_CELL_NAIVE_24
512.0
B_CELL_NAIVE_25
508.7
B_CELL_NAIVE_26
506.8
B_CELL_NAIVE_27
506.1
B_CELL_NAIVE_28
505.8
B_CELL_NAIVE_29
505.7
B_CELL_NAIVE_30
505.3
B_CELL_NAIVE_31
504.4
B_CELL_NAIVE_32
503.2
B_CELL_NAIVE_33
501.4
B_CELL_NAIVE_34
500.2
B_CELL_NAIVE_35
499.1
B_CELL_NAIVE_36
498.5
B_CELL_NAIVE_37
498.4
B_CELL_NAIVE_38
498.1
B_CELL_NAIVE_39
495.2
B_CELL_NAIVE_40
491.1
B_CELL_NAIVE_41
490.8
B_CELL_NAIVE_42
489.6
B_CELL_NAIVE_43
489.4
B_CELL_NAIVE_44
486.0
B_CELL_NAIVE_45
485.9
B_CELL_NAIVE_46
485.8
B_CELL_NAIVE_47
484.9
B_CELL_NAIVE_48
484.1
B_CELL_NAIVE_49
483.7
B_CELL_NAIVE_50
479.9
B_CELL_NAIVE_51
479.1
B_CELL_NAIVE_52
479.0
B_CELL_NAIVE_53
478.7
B_CELL_NAIVE_54
478.4
B_CELL_NAIVE_55
476.3
B_CELL_NAIVE_56
475.2
B_CELL_NAIVE_57
471.6
B_CELL_NAIVE_58
470.6
B_CELL_NAIVE_59
468.0
B_CELL_NAIVE_60
467.6
B_CELL_NAIVE_61
467.6
B_CELL_NAIVE_62
466.8
B_CELL_NAIVE_63
466.6
B_CELL_NAIVE_64
464.5
B_CELL_NAIVE_65
462.3
B_CELL_NAIVE_66
462.2
B_CELL_NAIVE_67
460.1
B_CELL_NAIVE_68
460.0
B_CELL_NAIVE_69
458.9
B_CELL_NAIVE_70
457.8
B_CELL_NAIVE_71
456.3
B_CELL_NAIVE_72
455.1
B_CELL_NAIVE_73
453.9
B_CELL_NAIVE_74
452.2
B_CELL_NAIVE_75
451.6
B_CELL_NAIVE_76
449.0
B_CELL_NAIVE_77
448.3
B_CELL_NAIVE_78
447.7
B_CELL_NAIVE_79
442.8
B_CELL_NAIVE_80
441.8
B_CELL_NAIVE_81
441.4
B_CELL_NAIVE_82
440.5
B_CELL_NAIVE_83
439.2
B_CELL_NAIVE_84
428.5
B_CELL_NAIVE_85
422.8
B_CELL_NAIVE_86
419.3
B_CELL_NAIVE_87
410.3
B_CELL_NAIVE_88
406.7
B_CELL_NAIVE_89
382.2
B_CELL_NAIVE_90
376.1
B_CELL_NAIVE_91
320.5
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