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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • IMMUNE

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  • RBM3
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:148.3 nTPM
Monaco:1003.4 nTPM
Schmiedel:489.5 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

148.3
HPA sample nTPM
Memory B-cell
nTPM: 148.3
Samples: 6

Max nTPM: 212.4
Min nTPM: 88.9
P10809_1017 145.1
P10809_1025 212.4
P10809_1044 88.9
P10809_1063 135.6
P10809_1092 167.9
P10809_1105 139.6
Naive B-cell
nTPM: 102.2
Samples: 6

Max nTPM: 208.1
Min nTPM: 69.3
P10809_1011 69.3
P10809_1029 98.5
P10809_1048 208.1
P10809_1067 76.3
P10809_1091 86.1
P10809_1104 74.9

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1003.4
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 541.1
Samples: 4

Max nTPM: 771.7
Min nTPM: 347.5
RHH5310_R3677 771.7
RHH5218_R3590 538.8
RHH5247_R3619 506.2
RHH5276_R3648 347.5
Naive B-cell
nTPM: 426.7
Samples: 4

Max nTPM: 577.6
Min nTPM: 276.3
RHH5308_R3675 451.1
RHH5216_R3588 577.6
RHH5245_R3617 276.3
RHH5274_R3646 401.8
Non-switched memory B-cell
nTPM: 537.4
Samples: 4

Max nTPM: 661.8
Min nTPM: 391.2
RHH5309_R3676 661.8
RHH5217_R3589 617.4
RHH5246_R3618 479.1
RHH5275_R3647 391.2
Plasmablast
nTPM: 1003.4
Samples: 4

Max nTPM: 1223.5
Min nTPM: 842.3
RHH5312_R3679 960.0
RHH5220_R3592 1223.5
RHH5249_R3621 987.8
RHH5278_R3650 842.3
Switched memory B-cell
nTPM: 607.4
Samples: 4

Max nTPM: 730.0
Min nTPM: 453.7
RHH5311_R3678 642.8
RHH5219_R3591 730.0
RHH5248_R3620 603.2
RHH5277_R3649 453.7

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

489.5
Schmiedel sample id TPM
Naive B-cell
TPM: 489.5
Samples: 91

Max TPM: 673.4
Min TPM: 320.5
B_CELL_NAIVE_1 673.4
B_CELL_NAIVE_2 638.0
B_CELL_NAIVE_3 609.3
B_CELL_NAIVE_4 591.6
B_CELL_NAIVE_5 576.0
B_CELL_NAIVE_6 569.2
B_CELL_NAIVE_7 568.0
B_CELL_NAIVE_8 551.9
B_CELL_NAIVE_9 550.9
B_CELL_NAIVE_10 549.6
B_CELL_NAIVE_11 549.4
B_CELL_NAIVE_12 544.9
B_CELL_NAIVE_13 539.6
B_CELL_NAIVE_14 537.3
B_CELL_NAIVE_15 536.1
B_CELL_NAIVE_16 534.8
B_CELL_NAIVE_17 531.5
B_CELL_NAIVE_18 530.5
B_CELL_NAIVE_19 530.4
B_CELL_NAIVE_20 525.7
B_CELL_NAIVE_21 520.2
B_CELL_NAIVE_22 519.1
B_CELL_NAIVE_23 512.2
B_CELL_NAIVE_24 512.0
B_CELL_NAIVE_25 508.7
B_CELL_NAIVE_26 506.8
B_CELL_NAIVE_27 506.1
B_CELL_NAIVE_28 505.8
B_CELL_NAIVE_29 505.7
B_CELL_NAIVE_30 505.3
B_CELL_NAIVE_31 504.4
B_CELL_NAIVE_32 503.2
B_CELL_NAIVE_33 501.4
B_CELL_NAIVE_34 500.2
B_CELL_NAIVE_35 499.1
B_CELL_NAIVE_36 498.5
B_CELL_NAIVE_37 498.4
B_CELL_NAIVE_38 498.1
B_CELL_NAIVE_39 495.2
B_CELL_NAIVE_40 491.1
B_CELL_NAIVE_41 490.8
B_CELL_NAIVE_42 489.6
B_CELL_NAIVE_43 489.4
B_CELL_NAIVE_44 486.0
B_CELL_NAIVE_45 485.9
B_CELL_NAIVE_46 485.8
B_CELL_NAIVE_47 484.9
B_CELL_NAIVE_48 484.1
B_CELL_NAIVE_49 483.7
B_CELL_NAIVE_50 479.9
B_CELL_NAIVE_51 479.1
B_CELL_NAIVE_52 479.0
B_CELL_NAIVE_53 478.7
B_CELL_NAIVE_54 478.4
B_CELL_NAIVE_55 476.3
B_CELL_NAIVE_56 475.2
B_CELL_NAIVE_57 471.6
B_CELL_NAIVE_58 470.6
B_CELL_NAIVE_59 468.0
B_CELL_NAIVE_60 467.6
B_CELL_NAIVE_61 467.6
B_CELL_NAIVE_62 466.8
B_CELL_NAIVE_63 466.6
B_CELL_NAIVE_64 464.5
B_CELL_NAIVE_65 462.3
B_CELL_NAIVE_66 462.2
B_CELL_NAIVE_67 460.1
B_CELL_NAIVE_68 460.0
B_CELL_NAIVE_69 458.9
B_CELL_NAIVE_70 457.8
B_CELL_NAIVE_71 456.3
B_CELL_NAIVE_72 455.1
B_CELL_NAIVE_73 453.9
B_CELL_NAIVE_74 452.2
B_CELL_NAIVE_75 451.6
B_CELL_NAIVE_76 449.0
B_CELL_NAIVE_77 448.3
B_CELL_NAIVE_78 447.7
B_CELL_NAIVE_79 442.8
B_CELL_NAIVE_80 441.8
B_CELL_NAIVE_81 441.4
B_CELL_NAIVE_82 440.5
B_CELL_NAIVE_83 439.2
B_CELL_NAIVE_84 428.5
B_CELL_NAIVE_85 422.8
B_CELL_NAIVE_86 419.3
B_CELL_NAIVE_87 410.3
B_CELL_NAIVE_88 406.7
B_CELL_NAIVE_89 382.2
B_CELL_NAIVE_90 376.1
B_CELL_NAIVE_91 320.5
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