A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
151.5
nTPM
Monaco:
458.8
nTPM
Schmiedel:
374.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.5
HPA sample
nTPM
NK-cell nTPM: 151.5
Samples: 6
Max nTPM: 217.5
Min nTPM: 104.5
P10809_1013
136.6
P10809_1033
217.5
P10809_1052
122.7
P10809_1071
184.4
P10809_1093
104.5
P10809_1103
143.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
458.8
Monaco sample
nTPM
NK-cell nTPM: 458.8
Samples: 4
Max nTPM: 617.1
Min nTPM: 270.9
RHH5316_R3683
485.2
RHH5224_R3596
617.1
RHH5253_R3625
270.9
RHH5282_R3654
462.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
374.8
Schmiedel sample id
TPM
NK-cell TPM: 374.8
Samples: 90
Max TPM: 455.9
Min TPM: 276.2
NK_1
455.9
NK_2
447.9
NK_3
446.1
NK_4
443.0
NK_5
436.9
NK_6
433.7
NK_7
430.5
NK_8
429.3
NK_9
428.1
NK_10
425.5
NK_11
422.3
NK_12
421.2
NK_13
416.5
NK_14
415.7
NK_15
414.3
NK_16
413.9
NK_17
412.7
NK_18
410.2
NK_19
408.2
NK_20
408.2
NK_21
407.1
NK_22
406.8
NK_23
402.0
NK_24
400.4
NK_25
400.0
NK_26
396.4
NK_27
394.5
NK_28
394.4
NK_29
393.5
NK_30
392.9
NK_31
392.7
NK_32
392.4
NK_33
392.1
NK_34
391.6
NK_35
388.3
NK_36
388.1
NK_37
387.0
NK_38
385.4
NK_39
384.9
NK_40
384.2
NK_41
382.9
NK_42
379.3
NK_43
377.6
NK_44
377.6
NK_45
374.6
NK_46
373.9
NK_47
372.9
NK_48
372.5
NK_49
369.9
NK_50
369.7
NK_51
369.0
NK_52
368.9
NK_53
368.6
NK_54
366.1
NK_55
364.9
NK_56
364.4
NK_57
363.8
NK_58
360.6
NK_59
360.6
NK_60
360.4
NK_61
359.6
NK_62
356.7
NK_63
354.1
NK_64
353.0
NK_65
352.2
NK_66
350.8
NK_67
349.2
NK_68
347.3
NK_69
346.8
NK_70
344.5
NK_71
344.0
NK_72
341.4
NK_73
336.4
NK_74
333.7
NK_75
332.7
NK_76
331.5
NK_77
331.3
NK_78
330.4
NK_79
329.5
NK_80
329.4
NK_81
327.4
NK_82
320.6
NK_83
318.9
NK_84
318.1
NK_85
316.8
NK_86
310.3
NK_87
304.6
NK_88
302.0
NK_89
287.7
NK_90
276.2
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