A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.2
nTPM
Monaco:
291.6
nTPM
GRANULOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.2
HPA sample
nTPM
Basophil nTPM: 33.2
Samples: 4
Max nTPM: 48.6
Min nTPM: 16.5
P10809_1038
16.5
P10809_1057
40.1
P10809_1084
48.6
P10809_1102
27.5
Eosinophil nTPM: 30.8
Samples: 6
Max nTPM: 54.8
Min nTPM: 16.3
P10809_1002
54.8
P10809_1021
28.6
P10809_1040
29.2
P10809_1059
20.7
P10809_1078
16.3
P10809_1101
35.3
Neutrophil nTPM: 28.8
Samples: 6
Max nTPM: 33.3
Min nTPM: 22.4
P10809_1019
28.4
P10809_1032
29.3
P10809_1051
22.4
P10809_1070
31.1
P10809_1079
28.5
P10809_1096
33.3
GRANULOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
291.6
Monaco sample
nTPM
Basophil nTPM: 291.6
Samples: 4
Max nTPM: 322.6
Min nTPM: 254.0
RHH5320_R3687
300.2
RHH5228_R3600
254.0
RHH5257_R3629
322.6
RHH5286_R3658
289.5
Neutrophil nTPM: 173.5
Samples: 4
Max nTPM: 201.9
Min nTPM: 142.2
RHH5319_R3686
149.2
RHH5227_R3599
142.2
RHH5256_R3628
201.9
RHH5285_R3657
200.8
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The Human Protein Atlas project is funded
