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  • RPS19
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1465.7 nTPM
HPA Brain:568.9 nTPM
GTEx:1465.7 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Pig:499.5 nTPM
Mouse:515.0 nTPM
Allen mouse:5.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

568.9
Sample id Sample description nTPM
Amygdala
nTPM: 532.5
2695 Female, age 67, right hemisphere 661.3
2514 Male, age 75, right hemisphere 559.1
2517 Female, age 94, left hemisphere 532.8
1987 Female, age 91, left hemisphere 484.2
2814 Male, age 76, right hemisphere 425.2
Basal amygdala
nTPM: 501.4
2827 Female, age 67, right hemisphere 737.9
2609 Male, age 75, right hemisphere 572.1
2110 Male, age 80, left hemisphere 472.2
2685 Female, age 94, left hemisphere 453.8
2243 Female, age 91, right hemisphere 389.5
1955 Male, age 76, both hemispheres 382.7
Central amygdala
nTPM: 541.1
2826 Female, age 94, left hemisphere 924.5
2515 Male, age 75, right hemisphere 620.6
2239 Male, age 80, left hemisphere 417.4
1905 Male, age 76, both hemispheres 391.3
2701 Female, age 91, right hemisphere 351.7
Corticomedial amygdala
nTPM: 453.3
2428 Male, age 75, right hemisphere 624.7
2535 Female, age 67, right hemisphere 550.0
2829 Male, age 80, left hemisphere 445.8
2242 Female, age 91, right hemisphere 401.2
2429 Female, age 94, left hemisphere 373.2
2240 Male, age 76, both hemispheres 324.9
Lateral amygdala
nTPM: 568.9
2830 Female, age 67, right hemisphere 882.0
2534 Female, age 94, left hemisphere 625.9
2516 Male, age 75, right hemisphere 608.6
2256 Male, age 80, left hemisphere 499.5
2255 Female, age 91, right hemisphere 420.8
1883 Male, age 76, both hemispheres 376.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1465.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1465.7
Samples: 181

Max nTPM: 4194.8
Min nTPM: 598.8
Std nTPM: 576.3
Median nTPM: 1324.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4194.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3644.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3396.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3300.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3214.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3068.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2872.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2623.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2494.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 2459.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2418.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2406.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 2387.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 2379.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2373.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 2361.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 2331.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2318.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2276.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2229.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 2102.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2034.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 2033.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1983.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1950.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1938.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1931.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1918.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1909.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1885.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1809.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1805.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1794.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1775.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1774.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1767.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1760.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1753.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1747.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1742.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1730.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1725.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1708.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1705.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1702.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1693.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1678.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1671.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1667.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1661.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1659.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1658.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1656.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1626.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1617.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1616.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1594.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1592.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1584.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1560.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1556.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1553.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1550.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1529.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1527.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1517.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1513.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1507.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1472.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1462.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1455.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1445.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1434.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1430.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1423.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1420.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1401.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1398.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1397.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1391.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1390.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1389.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1384.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1372.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1371.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1365.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1358.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1350.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1339.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1326.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1324.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1323.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1321.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1321.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1321.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1319.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1310.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1303.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1298.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1297.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1290.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1278.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1268.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1255.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1240.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1228.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1225.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1225.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1218.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1217.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1216.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1206.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1205.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1203.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1200.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1195.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1187.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1183.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1182.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1180.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1176.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1174.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1171.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1160.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1156.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1149.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1149.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1148.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1147.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1143.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1135.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1129.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1129.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1128.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1122.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1112.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1108.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1084.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1080.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1064.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1058.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1057.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1055.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1055.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1044.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1032.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1020.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1018.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1016.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 996.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 995.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 986.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 982.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 974.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 973.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 965.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 960.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 945.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 913.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 910.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 908.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 902.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 890.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 888.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 884.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 872.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 845.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 840.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 826.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 825.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 824.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 813.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 803.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 795.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 750.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 749.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 730.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 699.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 670.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 665.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 598.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 19.4
FF:10151-102I7 76 years, female 19.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

499.5
Pig sample Sample description nTPM
Amygdala
nTPM: 499.5
Samples: 4

Max nTPM: 637.7
Min nTPM: 281.2
Sample A Female 625.3
Sample B Female 637.7
Sample C Male 453.8
Sample D Male 281.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

515.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 515.0
Samples: 4

Max nTPM: 557.2
Min nTPM: 470.3
Sample A Male 470.3
Sample B Male 557.2
Sample C Female 544.0
Sample D Female 488.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.9
68633443 Antisense, RP_050125_02_H03, Mouse strain C57BL/6J (56 days, male) 6.5
72081492 Antisense, RP_051017_01_C08, Mouse strain C57BL/6J (56 days, male) 5.3

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