On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1465.7
nTPM
HPA Brain:
571.6
nTPM
GTEx:
1465.7
nTPM
FANTOM5:
19.4
Scaled Tags Per Million
Mouse:
299.8
nTPM
Pig:
499.9
nTPM
AMYGDALA - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - AMYGDALA, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RXFP1+ ...
c-2
Excitatory (VGLUT1/2)
c-3
Inhibitory (GAD1/2) CXCL14+...
c-4
Excitatory (VGLUT1/2)
c-5
Excitatory (VGLUT1/2)
c-6
Inhibitory (GAD1/2) CXCL14+...
c-7
Excitatory (VGLUT1/2)
c-8
Excitatory (VGLUT1/2)
c-9
Excitatory (VGLUT1)
c-10
Excitatory (VGLUT1)
c-11
Inhibitory (GAD1/2)
c-12
Inhibitory (GAD1/2) SST+ LH...
c-13
Excitatory (VGLUT2)
c-14
Inhibitory (GAD1/2) KIT+ LA...
c-15
Inhibitory (GAD1/2) TAC1+ L...
c-16
Excitatory (VGLUT1/2)
c-17
Inhibitory (GAD1/2) TSHZ1+
c-18
Excitatory (VGLUT1/2)
c-19
Inhibitory (GAD1/2) CXCL14+...
c-20
Excitatory (VGLUT1/2)
c-21
Excitatory (VGLUT1/2)
c-22
Excitatory (VGLUT1)
c-23
Unassigned
c-24
Inhibitory (GAD1/2) PENK+ D...
c-25
Excitatory (VGLUT1/2)
c-26
Inhibitory (GAD1/2) CXCL14+...
c-27
Inhibitory (GAD1/2) LHX6+ E...
c-28
Excitatory (VGLUT1/2) SATB2...
c-29
Inhibitory (GAD1) LHX6+
c-30
Excitatory (VGLUT1/2)
c-31
Excitatory (VGLUT1/2)
c-32
Excitatory (VGLUT1)
c-33
Inhibitory (GAD1/2) TAC1+ P...
c-34
Excitatory (VGLUT1/2)
c-35
Excitatory (VGLUT1/2) ETV1+...
c-36
Inhibitory (GAD1/2) PENK+
c-37
Excitatory (VGLUT1/2)
c-38
Excitatory (VGLUT1) FOXP2+
c-39
Excitatory (VGLUT1/2)
c-40
Excitatory (VGLUT1) SOX5+
c-41
Inhibitory (GAD1/2) NOS1+ M...
c-42
Inhibitory (GAD1/2) NOS1+ S...
c-43
Excitatory (VGLUT1/2) ETV1+
c-44
Excitatory (VGLUT1/2) NOS1+
c-45
Excitatory (VGLUT2)
c-46
Excitatory (VGLUT1)
c-47
Serotonergic Inhibitory (GA...
c-48
Excitatory (VGLUT1) FOXP2+ ...
c-49
Excitatory (VGLUT1)
c-50
Inhibitory (GAD1/2) RORB+ K
c-51
CALB2+
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - AMYGDALA, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Astrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocyte progenitor ...
c-7
Microglia
c-8
Oligodendrocytes
c-9
Astrocytes
c-10
Astrocytes (CD44+)
c-11
Microglia
c-12
Oligodendrocyte progenitor ...
c-13
Astrocytes
c-14
Oligodendrocytes
c-15
Astrocytes
c-16
Oligodendrocytes
c-17
Oligodendrocytes
c-18
Fibroblasts
c-19
Ependymal cells
c-20
Mural cells & vECs
c-21
Macrophages
c-22
Immature oligodendrocytes
c-23
Pericytes
c-24
NK-cells & T-cells
c-25
Oligodendrocyte progenitor ...
c-26
Vascular smooth muscle cell
c-27
Fibroblasts (BNC2+ KCNMA1+ ...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
AMYGDALA - Annotated protein expression
Pending normal tissue analysis
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
571.6
Sample id
Sample description
nTPM
Basal amygdala nTPM: 503.9
2827
Female, age 67, right hemisphere
744.7
2609
Male, age 75, right hemisphere
572.4
2110
Male, age 80, left hemisphere
474.9
2685
Female, age 94, left hemisphere
456.6
2243
Female, age 91, right hemisphere
391.1
1955
Male, age 76, both hemispheres
383.6
Central amygdala nTPM: 543.1
2826
Female, age 94, left hemisphere
930.0
2515
Male, age 75, right hemisphere
620.6
2239
Male, age 80, left hemisphere
419.5
1905
Male, age 76, both hemispheres
392.2
2701
Female, age 91, right hemisphere
353.4
Corticomedial amygdala nTPM: 455.3
2428
Male, age 75, right hemisphere
624.5
2535
Female, age 67, right hemisphere
554.9
2829
Male, age 80, left hemisphere
448.3
2242
Female, age 91, right hemisphere
402.8
2429
Female, age 94, left hemisphere
375.1
2240
Male, age 76, both hemispheres
325.9
Lateral amygdala nTPM: 571.6
2830
Female, age 67, right hemisphere
889.5
2534
Female, age 94, left hemisphere
629.3
2516
Male, age 75, right hemisphere
608.8
2256
Male, age 80, left hemisphere
502.1
2255
Female, age 91, right hemisphere
422.3
1883
Male, age 76, both hemispheres
377.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1465.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 1465.7
Samples: 181
Max nTPM: 4194.8
Min nTPM: 598.8
Std nTPM: 576.3
Median nTPM: 1324.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
4194.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
3644.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
3396.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
3300.3
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
3214.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
3068.5
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
2872.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
2623.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
2494.4
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
2459.0
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
2418.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
2406.1
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
2387.1
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
2379.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
2373.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
2361.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
2331.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
2318.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
2276.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
2229.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
2102.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
2034.5
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
2033.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
1983.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
1950.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
1938.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
1931.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
1918.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
1909.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
1885.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
1809.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
1805.5
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
1794.8
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
1775.6
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
1774.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
1767.7
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
1760.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
1753.5
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
1747.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
1742.6
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
1730.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
1725.7
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
1708.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
1705.8
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
1702.8
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
1693.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
1678.1
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
1671.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
1667.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
1661.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
1659.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
1658.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
1656.0
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
1626.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
1617.6
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
1616.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
1594.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
1592.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
1584.1
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
1560.6
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
1556.0
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
1553.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
1550.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
1529.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
1527.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
1517.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
1513.7
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
1507.0
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
1472.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
1462.9
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
1455.5
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
1445.1
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
1434.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
1430.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
1423.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
1420.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
1401.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
1398.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
1397.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
1391.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
1390.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
1389.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
1384.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
1372.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
1371.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
1365.8
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
1358.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
1350.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
1339.6
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
1326.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
1324.8
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
1323.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
1321.7
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
1321.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
1321.0
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
1319.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
1310.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
1303.2
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
1298.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
1297.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
1290.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
1278.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
1268.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
1255.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
1240.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
1228.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1225.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
1225.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
1218.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
1217.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
1216.7
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
1206.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
1205.8
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
1203.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
1200.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
1195.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
1187.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
1183.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
1182.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1180.8
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
1176.7
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
1174.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
1171.4
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
1160.1
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
1156.8
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
1149.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
1149.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
1148.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
1147.8
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
1143.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
1135.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
1129.4
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
1129.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
1128.3
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
1122.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
1112.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
1108.9
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
1084.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
1080.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
1064.9
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
1058.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
1057.3
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
1055.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
1055.0
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
1044.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
1032.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
1020.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
1018.0
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
1016.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
996.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
995.8
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
986.4
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
982.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
974.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
973.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
965.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
960.5
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
945.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
913.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
910.1
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
908.4
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
902.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
890.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
888.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
884.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
872.0
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
845.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
840.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
826.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
825.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
824.6
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
813.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
803.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
795.1
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
750.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
749.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
730.6
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
699.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
670.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
665.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
598.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
499.9
Pig sample
Sample description
nTPM
Amygdala nTPM: 499.9
Samples: 4
Max nTPM: 637.9
Min nTPM: 281.6
Sample A
Female
625.7
Sample B
Female
637.9
Sample C
Male
454.3
Sample D
Male
281.6
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
299.8
Mouse sample
Sample description
nTPM
Amygdala nTPM: 299.8
Samples: 4
Max nTPM: 332.5
Min nTPM: 273.6
Sample A
309.6
Sample B
332.5
Sample C
283.5
Sample D
273.6
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The Human Protein Atlas project is funded
