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  • TISSUE

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  • RPS19
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1353.3 nTPM
HPA Brain:706.5 nTPM
GTEx:1353.3 nTPM
FANTOM5:18.4 Scaled Tags Per Million
Pig:811.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

706.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 562.9
1981 Female, age 72, midline 724.3
2565 Male, age 75, midline 686.1
2048 Male, age 55, midline 486.4
2816 Male, age 47, midline 459.5
2194 Female, age 79, both hemispheres 458.0
Cervical spinal cord, dorsal horn
nTPM: 558.5
2173 Female, age 72, unknown 748.7
2069 Male, age 47, both hemispheres 670.5
1877 Male, age 55, unknown 581.6
2296 Male, age 66, both hemispheres 533.6
2297 Male, age 75, both hemispheres 415.0
2721 Male, age 90, both hemispheres 401.3
Cervical spinal cord, ventral horn
nTPM: 706.5
2809 Male, age 90, both hemispheres 1002.8
2098 Female, age 72, unknown 895.6
2480 Male, age 75, both hemispheres 830.3
2295 Male, age 66, both hemispheres 579.3
2068 Male, age 55, unknown 571.3
2820 Female, age 79, both hemispheres 359.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1353.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1353.3
Samples: 204

Max nTPM: 3604.2
Min nTPM: 497.8
Std nTPM: 471.1
Median nTPM: 1269.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 3604.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3087.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2899.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 2779.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2639.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2491.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 2294.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2238.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2136.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2124.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 2101.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 2098.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 2097.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2089.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 2080.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2057.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1995.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1994.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 1990.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1983.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1951.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1937.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1926.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1921.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1899.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1892.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1878.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1862.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1840.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 1813.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1807.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1789.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1785.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1778.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1732.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1727.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1713.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1703.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1702.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1691.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1690.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1681.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1667.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1666.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1665.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1653.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1620.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1617.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1615.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1609.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1595.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1582.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 1576.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1568.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1543.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1540.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1537.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1526.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1520.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1515.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1512.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1508.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1506.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1505.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1497.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1491.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1478.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1477.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1472.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1459.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1437.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1436.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1434.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1426.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1426.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1419.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1415.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1415.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1408.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1407.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1405.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1402.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1400.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1395.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1393.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1385.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1384.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1381.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1379.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1366.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1362.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1357.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1351.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1346.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1338.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1323.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1312.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1311.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1293.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1284.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 1280.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1271.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1268.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1262.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1256.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1253.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1251.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1250.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 1239.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1238.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1237.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1231.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1224.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1224.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1214.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1214.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1212.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1209.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1208.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1206.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1202.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1177.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1174.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1160.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1158.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1146.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1141.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1136.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 1136.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1129.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1120.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1117.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1109.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1104.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1104.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1103.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1101.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1096.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1092.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1081.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1080.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1075.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1067.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1066.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1063.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1063.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1062.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1058.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1054.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1045.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1044.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1039.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1038.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1025.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1023.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1022.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1020.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 998.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 996.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 994.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 994.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 991.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 983.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 976.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 959.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 959.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 955.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 951.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 951.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 950.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 943.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 939.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 932.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 923.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 922.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 918.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 903.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 895.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 887.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 885.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 885.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 869.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 860.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 853.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 837.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 827.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 794.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 794.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 772.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 772.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 751.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 745.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 743.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 714.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 710.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 709.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 682.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 681.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 678.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 640.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 634.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 624.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 533.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 497.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 18.4
FF:10181-103D1 60 years, female 19.4
FF:10159-103A6 76 years, female 17.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

811.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 811.6
Samples: 4

Max nTPM: 1168.7
Min nTPM: 572.0
Sample A Female 572.0
Sample B Female 905.3
Sample C Male 1168.7
Sample D Male 600.3
Ventral spinal cord
nTPM: 687.4
Samples: 4

Max nTPM: 768.2
Min nTPM: 526.3
Sample A Female 526.3
Sample B Female 768.2
Sample C Male 753.3
Sample D Male 701.9

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