MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:949.2 nTPM
HPA Brain:441.0 nTPM
GTEx:949.2 nTPM
FANTOM5:2.1 Scaled Tags Per Million
Pig:112.0 nTPM
Mouse:413.7 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 441.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 393.5
2586 Male, age 75, left hemisphere 543.2
2666 Male, age 74, left hemisphere 420.3
2828 Female, age 72, unknown 402.8
2411 Female, age 72, unknown 395.0
2219 Male, age 76, both hemispheres 391.0
1870 Female, age 42, unknown 373.8
1833 Male, age 53, unknown 365.4
2019 Male, age 18, unknown 355.1
1830 Male, age 51, unknown 345.7
1827 Male, age 72, unknown 343.1
Dorsal raphe nucleus
nTPM: 403.6
2298 Female, age 72, unknown 461.7
1828 Male, age 53, unknown 397.6
2016 Female, age 72, unknown 396.1
2750 Male, age 76, both hemispheres 393.3
2047 Male, age 72, unknown 369.3
Inferior colliculus
nTPM: 368.1
2849 Male, age 72, unknown 391.1
1890 Male, age 53, unknown 388.7
1848 Female, age 42, unknown 357.6
2097 Female, age 72, unknown 335.0
Median raphe nucleus
nTPM: 386.8
2220 Male, age 76, midline 386.8
Periaquaductal grey, anterior
nTPM: 424.2
2502 Female, age 75, unknown 494.2
1795 Male, age 51, unknown 415.2
1947 Male, age 18, unknown 363.2
Periaquaductal grey, dorsal
nTPM: 379.3
1840 Male, age 53, unknown 396.3
1831 Male, age 72, unknown 395.0
2464 Female, age 72, unknown 372.0
2850 Male, age 76, both hemispheres 353.7
Periaquaductal grey, lateral
nTPM: 354.8
2272 Male, age 74, both hemispheres 364.3
2053 Male, age 18, unknown 361.0
2140 Male, age 76, both hemispheres 339.0
Pretectal area
nTPM: 363.0
2316 Male, age 76, right hemisphere 409.7
1817 Female, age 42, unknown 396.3
2007 Male, age 72, unknown 393.4
2224 Female, age 72, unknown 387.4
1815 Male, age 53, unknown 375.6
1816 Male, age 51, unknown 371.3
2825 Male, age 18, unknown 353.0
2407 Male, age 75, both hemispheres 334.6
2273 Male, age 74, both hemispheres 331.7
2667 Female, age 75, unknown 323.7
1944 Female, age 72, unknown 315.9
Red nucleus
nTPM: 409.1
2503 Female, age 72, unknown 514.8
2769 Male, age 72, unknown 449.8
2584 Male, age 75, left hemisphere 449.3
1865 Male, age 51, unknown 421.4
2227 Male, age 72, unknown 418.5
2725 Female, age 75, unknown 409.7
1904 Male, age 53, unknown 408.5
1821 Female, age 72, unknown 407.0
2785 Male, age 18, unknown 398.8
2588 Male, age 74, left hemisphere 392.5
1954 Female, age 42, unknown 331.6
2823 Male, age 76, right hemisphere 307.5
Substantia nigra
nTPM: 441.0
2699 Male, age 18, unknown 607.3
1851 Male, age 51, unknown 574.8
2665 Male, age 74, both hemispheres 497.0
1916 Female, age 42, unknown 468.5
2590 Female, age 75, unknown 412.8
2409 Female, age 72, unknown 406.2
2583 Male, age 75, right hemisphere 373.1
1941 Male, age 53, unknown 367.8
1889 Female, age 72, unknown 363.8
2241 Male, age 72, unknown 338.7
Superior colliculus
nTPM: 407.5
2587 Male, age 74, left hemisphere 464.0
1995 Male, age 72, unknown 463.7
1913 Female, age 42, unknown 453.1
1796 Male, age 53, unknown 441.2
2664 Male, age 75, both hemispheres 435.4
2668 Female, age 75, unknown 399.5
1839 Male, age 51, unknown 378.3
2261 Male, age 18, unknown 375.5
2087 Female, age 72, unknown 346.9
1895 Male, age 76, right hemisphere 316.9
Ventral tegmental area
nTPM: 437.8
1915 Female, age 42, unknown 506.3
2410 Female, age 72, unknown 458.9
2223 Female, age 72, unknown 449.9
2021 Male, age 53, unknown 438.9
2218 Male, age 76, both hemispheres 396.6
1942 Male, age 51, unknown 376.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 949.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 949.2
Samples: 183

Max nTPM: 2195.5
Min nTPM: 352.1
Std nTPM: 331.6
Median nTPM: 888.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2195.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2135.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2049.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1802.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1691.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1607.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1575.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1574.0
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1570.1
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1546.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1542.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.1
FF:10158-103A5 76 years, female 2.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 112.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 107.2
Samples: 4

Max nTPM: 130.2
Min nTPM: 95.7
Sample A Female 130.2
Sample B Female 103.6
Sample C Male 99.3
Sample D Male 95.7
Midbrain
nTPM: 103.4
Samples: 4

Max nTPM: 134.4
Min nTPM: 84.8
Sample A Female 134.4
Sample B Female 109.0
Sample C Male 85.5
Sample D Male 84.8
Periaqueductal gray
nTPM: 88.7
Samples: 3

Max nTPM: 97.5
Min nTPM: 80.6
Sample B Female 87.9
Sample C Male 97.5
Sample D Male 80.6
Superior colliculi
nTPM: 112.0
Samples: 4

Max nTPM: 139.3
Min nTPM: 95.8
Sample A Female 139.3
Sample B Female 115.0
Sample C Male 95.8
Sample D Male 98.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 413.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 413.7
Samples: 4

Max nTPM: 456.9
Min nTPM: 354.7
Sample A Male 456.9
Sample B Male 434.5
Sample C Female 354.7
Sample D Female 408.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
678716 Antisense, RP_040914_02_G08, Mouse strain C57BL/6J (56 days, male) 0.5

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